Analysis of interatomic Contacts of Structural Units in PDB entry:
4YXP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YXP entry

There are 2 chains in PDB entry 4YXP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 242PHE 512
B
 ALA 242PHE 512
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 4YXP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
246 255Right-handed alpha
Helix 2
AA2
A
255 260Right-handed alpha
Helix 3
AA3
A
261 276Right-handed alpha
Helix 4
AA4
A
292 297Right-handed alpha
Helix 5
AA5
A
311 329Right-handed alpha
Helix 6
AA6
A
329 347Right-handed alpha
Helix 7
AA7
A
348 369Right-handed alpha
Helix 8
AA8
A
377 382Right-handed alpha
Helix 9
AA9
A
382 406Right-handed alpha
Helix 10
AB1
A
409 417Right-handed alpha
Helix 11
AB2
A
418 422Right-handed 310
Helix 12
AB3
A
424 443Right-handed alpha
Helix 13
AB4
A
448 453Right-handed 310
Helix 14
AB5
A
466 479Right-handed alpha
Helix 15
AB6
A
480 482Right-handed 310
Helix 16
AB7
A
485 497Right-handed alpha
Helix 17
AB8
B
246 255Right-handed alpha
Helix 18
AB9
B
255 260Right-handed alpha
Helix 19
AC1
B
261 276Right-handed alpha
Helix 20
AC2
B
292 297Right-handed alpha
Helix 21
AC3
B
311 329Right-handed alpha
Helix 22
AC4
B
329 347Right-handed alpha
Helix 23
AC5
B
348 370Right-handed alpha
Helix 24
AC6
B
377 382Right-handed alpha
Helix 25
AC7
B
382 405Right-handed alpha
Helix 26
AC8
B
409 417Right-handed alpha
Helix 27
AC9
B
418 422Right-handed 310
Helix 28
AD1
B
424 442Right-handed alpha
Helix 29
AD2
B
448 453Right-handed 310
Helix 30
AD3
B
466 479Right-handed alpha
Helix 31
AD4
B
480 482Right-handed 310
Helix 32
AD5
B
485 497Right-handed alpha
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There are no sheets in PDB entry 4YXP
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il