Analysis of interatomic Contacts of Structural Units in PDB entry:
4YY0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4YY0 entry

There are 5 chains in PDB entry 4YY0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1	GLN 325
B	GLY 330	TYR 488
C	ASP 1	GLN 325
D	GLY 330	TYR 488
E	ASP 1	GLN 295

There are 26 helices in PDB entry 4YY0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	63	Right-handed alpha
Helix 2	AA2	A	64	71	Right-handed 310
Helix 3	AA3	A	97	107	Right-handed alpha
Helix 4	AA4	A	118	122	Right-handed 310
Helix 5	AA5	A	185	194	Right-handed alpha
Helix 6	AA6	B	366	388	Right-handed alpha
Helix 7	AA7	B	403	453	Right-handed alpha
Helix 8	AA8	B	478	483	Right-handed alpha
Helix 9	AA9	C	56	63	Right-handed alpha
Helix 10	AB1	C	64	71	Right-handed 310
Helix 11	AB2	C	97	107	Right-handed alpha
Helix 12	AB3	C	118	122	Right-handed 310
Helix 13	AB4	C	185	194	Right-handed alpha
Helix 14	AB5	D	366	388	Right-handed alpha
Helix 15	AB6	D	400	402	Right-handed 310
Helix 16	AB7	D	403	455	Right-handed alpha
Helix 17	AB8	D	474	481	Right-handed alpha
Helix 18	AB9	E	56	63	Right-handed alpha
Helix 19	AC1	E	64	71	Right-handed 310
Helix 20	AC2	E	97	107	Right-handed alpha
Helix 21	AC3	E	118	122	Right-handed 310
Helix 22	AC4	E	185	194	Right-handed alpha
Helix 23	AC5	F	366	388	Right-handed alpha
Helix 24	AC6	F	400	402	Right-handed 310
Helix 25	AC7	F	403	453	Right-handed alpha
Helix 26	AC8	F	474	484	Right-handed alpha

There are 34 sheets in PDB entry 4YY0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	361	365	first strand
Strand 2	B	351	356	anti-parallel
Strand 3	A	2	7	anti-parallel
Strand 4	B	466	468	anti-parallel
Strand 5	B	460	461	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	16	first strand
Strand 2	A	24	25	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	315	317	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	34	first strand
Strand 2	A	294	295	parallel
Strand 3	A	307	308	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	44	first strand
Strand 2	A	274	279	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	51	first strand
Strand 2	A	79	81	parallel
Strand 3	A	267	269	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	75	first strand
Strand 2	A	108	115	anti-parallel
Strand 3	A	254	260	anti-parallel
Strand 4	A	174	182	anti-parallel
Strand 5	A	227	235	anti-parallel
Strand 6	A	93	95	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	75	first strand
Strand 2	A	108	115	anti-parallel
Strand 3	A	254	260	anti-parallel
Strand 4	A	174	182	anti-parallel
Strand 5	A	249	252	anti-parallel
Strand 6	A	148	150	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	126	first strand
Strand 2	A	152	153	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	167	first strand
Strand 2	A	240	245	anti-parallel
Strand 3	A	200	203	anti-parallel
Strand 4	A	208	211	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	286	287	first strand
Strand 2	A	281	283	anti-parallel
Strand 3	A	301	303	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	360	365	first strand
Strand 2	D	351	357	anti-parallel
Strand 3	C	2	7	anti-parallel
Strand 4	D	466	469	anti-parallel
Strand 5	D	459	461	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	16	first strand
Strand 2	C	24	25	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	31	first strand
Strand 2	C	315	317	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	34	first strand
Strand 2	C	294	295	parallel
Strand 3	C	307	308	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	44	first strand
Strand 2	C	274	279	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	51	first strand
Strand 2	C	79	81	parallel
Strand 3	C	267	269	parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	75	first strand
Strand 2	C	108	115	anti-parallel
Strand 3	C	254	260	anti-parallel
Strand 4	C	174	182	anti-parallel
Strand 5	C	227	235	anti-parallel
Strand 6	C	93	95	parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	75	first strand
Strand 2	C	108	115	anti-parallel
Strand 3	C	254	260	anti-parallel
Strand 4	C	174	182	anti-parallel
Strand 5	C	249	252	anti-parallel
Strand 6	C	148	150	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	126	first strand
Strand 2	C	152	153	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	167	first strand
Strand 2	C	240	245	anti-parallel
Strand 3	C	200	203	anti-parallel
Strand 4	C	208	211	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	281	283	first strand
Strand 2	C	301	303	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	F	351	356	anti-parallel
Strand 3	F	361	365	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	16	first strand
Strand 2	E	24	25	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	31	first strand
Strand 2	E	315	317	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	33	34	first strand
Strand 2	E	294	295	parallel
Strand 3	E	307	308	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	44	first strand
Strand 2	E	274	279	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	50	51	first strand
Strand 2	E	79	81	parallel
Strand 3	E	267	269	parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	74	75	first strand
Strand 2	E	108	115	anti-parallel
Strand 3	E	254	260	anti-parallel
Strand 4	E	174	182	anti-parallel
Strand 5	E	227	235	anti-parallel
Strand 6	E	93	95	parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	74	75	first strand
Strand 2	E	108	115	anti-parallel
Strand 3	E	254	260	anti-parallel
Strand 4	E	174	182	anti-parallel
Strand 5	E	249	252	anti-parallel
Strand 6	E	148	150	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	125	126	first strand
Strand 2	E	152	153	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	162	167	first strand
Strand 2	E	240	245	anti-parallel
Strand 3	E	200	203	anti-parallel
Strand 4	E	208	211	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	281	283	first strand
Strand 2	E	301	303	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	459	461	first strand
Strand 2	F	467	469	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4YY0

Analysis of interatomic Contacts of Structural Units in PDB entry:
4YY0