Analysis of interatomic Contacts of Structural Units in PDB entry:
4YYE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4YYE entry

There are 4 chains in PDB entry 4YYE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 36	LYS 462
B	ALA 36	LYS 462
C	G 1	C 74
D	G 1	C 74

There are 34 helices in PDB entry 4YYE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	47	Right-handed alpha
Helix 2	AA2	A	62	83	Right-handed alpha
Helix 3	AA3	A	97	104	Right-handed alpha
Helix 4	AA4	A	104	109	Right-handed alpha
Helix 5	AA5	A	132	142	Right-handed alpha
Helix 6	AA6	A	148	150	Right-handed 310
Helix 7	AA7	A	165	169	Right-handed 310
Helix 8	AA8	A	188	190	Right-handed 310
Helix 9	AA9	A	191	209	Right-handed alpha
Helix 10	AB1	A	238	257	Right-handed alpha
Helix 11	AB2	A	296	301	Right-handed alpha
Helix 12	AB3	A	326	338	Right-handed alpha
Helix 13	AB4	A	342	346	Right-handed 310
Helix 14	AB5	A	359	375	Right-handed alpha
Helix 15	AB6	A	402	413	Right-handed alpha
Helix 16	AB7	A	422	429	Right-handed alpha
Helix 17	AB8	A	446	460	Right-handed alpha
Helix 18	AB9	B	37	47	Right-handed alpha
Helix 19	AC1	B	62	83	Right-handed alpha
Helix 20	AC2	B	97	104	Right-handed alpha
Helix 21	AC3	B	104	109	Right-handed alpha
Helix 22	AC4	B	132	143	Right-handed alpha
Helix 23	AC5	B	146	150	Right-handed 310
Helix 24	AC6	B	165	169	Right-handed 310
Helix 25	AC7	B	188	190	Right-handed 310
Helix 26	AC8	B	191	209	Right-handed alpha
Helix 27	AC9	B	238	257	Right-handed alpha
Helix 28	AD1	B	295	301	Right-handed alpha
Helix 29	AD2	B	326	338	Right-handed alpha
Helix 30	AD3	B	342	346	Right-handed 310
Helix 31	AD4	B	359	375	Right-handed alpha
Helix 32	AD5	B	402	413	Right-handed alpha
Helix 33	AD6	B	422	429	Right-handed alpha
Helix 34	AD7	B	446	460	Right-handed alpha

There are 11 sheets in PDB entry 4YYE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	50	first strand
Strand 2	A	60	61	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	88	first strand
Strand 2	A	152	156	parallel
Strand 3	A	177	187	anti-parallel
Strand 4	A	159	161	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	88	first strand
Strand 2	A	152	156	parallel
Strand 3	A	177	187	anti-parallel
Strand 4	A	316	325	anti-parallel
Strand 5	A	285	294	anti-parallel
Strand 6	A	273	279	anti-parallel
Strand 7	A	225	229	anti-parallel
Strand 8	A	260	263	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	96	first strand
Strand 2	A	126	128	anti-parallel
Strand 3	A	115	117	anti-parallel
Strand 4	B	115	117	anti-parallel
Strand 5	B	126	128	anti-parallel
Strand 6	B	94	96	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	146	first strand
Strand 2	A	305	306	parallel
Strand 3	A	312	313	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	396	first strand
Strand 2	A	350	354	parallel
Strand 3	A	417	421	parallel
Strand 4	A	431	435	anti-parallel
Strand 5	A	443	445	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	50	first strand
Strand 2	B	60	61	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	88	first strand
Strand 2	B	152	156	parallel
Strand 3	B	177	187	anti-parallel
Strand 4	B	159	161	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	88	first strand
Strand 2	B	152	156	parallel
Strand 3	B	177	187	anti-parallel
Strand 4	B	316	325	anti-parallel
Strand 5	B	285	294	anti-parallel
Strand 6	B	273	279	anti-parallel
Strand 7	B	225	229	anti-parallel
Strand 8	B	260	263	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	305	306	first strand
Strand 2	B	312	313	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	394	396	first strand
Strand 2	B	350	354	parallel
Strand 3	B	417	421	parallel
Strand 4	B	431	435	anti-parallel
Strand 5	B	442	445	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4YYE

Analysis of interatomic Contacts of Structural Units in PDB entry:
4YYE