Analysis of interatomic Contacts of Structural Units in PDB entry:
4YYI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YYI entry

There are 10 chains in PDB entry 4YYI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 23SER 122
B
 THR 23SER 122
C
 GLY 4GLY 4
C
 GLY 6GLY 7
C
 GLY 9GLY 9
D
 SER 22SER 122
E
 SER 22SER 122
F
 GLY 4GLY 4
F
 GLY 6GLY 7
F
 GLY 9GLY 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 4YYI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 39Right-handed alpha
Helix 2
AA2
A
56 61Right-handed alpha
Helix 3
AA3
A
66 76Right-handed alpha
Helix 4
AA4
A
81 100Right-handed alpha
Helix 5
AA5
A
104 121Right-handed alpha
Helix 6
AA6
B
24 38Right-handed alpha
Helix 7
AA7
B
56 61Right-handed alpha
Helix 8
AA8
B
66 76Right-handed alpha
Helix 9
AA9
B
81 100Right-handed alpha
Helix 10
AB1
B
104 121Right-handed alpha
Helix 11
AB2
D
23 39Right-handed alpha
Helix 12
AB3
D
56 61Right-handed alpha
Helix 13
AB4
D
66 76Right-handed alpha
Helix 14
AB5
D
81 100Right-handed alpha
Helix 15
AB6
D
104 121Right-handed alpha
Helix 16
AB7
E
23 38Right-handed alpha
Helix 17
AB8
E
56 61Right-handed alpha
Helix 18
AB9
E
66 76Right-handed alpha
Helix 19
AC1
E
81 100Right-handed alpha
Helix 20
AC2
E
104 121Right-handed alpha
Back to top of page
There are no sheets in PDB entry 4YYI
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il