Analysis of interatomic Contacts of Structural Units in PDB entry:
4YYM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YYM entry

There are 4 chains in PDB entry 4YYM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1500LEU 1631
B
 ASP 1500GLU 1632
Z
 GLY 6GLY 7
Z
 GLY 9GLY 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 4YYM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1501 1518Right-handed alpha
Helix 2
AA2
A
1525 1530Right-handed 310
Helix 3
AA3
A
1539 1544Right-handed alpha
Helix 4
AA4
A
1549 1559Right-handed alpha
Helix 5
AA5
A
1564 1584Right-handed alpha
Helix 6
AA6
A
1587 1607Right-handed alpha
Helix 7
AA7
A
1607 1631Right-handed alpha
Helix 8
AA8
B
1501 1518Right-handed alpha
Helix 9
AA9
B
1525 1529Right-handed 310
Helix 10
AB1
B
1539 1544Right-handed alpha
Helix 11
AB2
B
1549 1559Right-handed alpha
Helix 12
AB3
B
1564 1584Right-handed alpha
Helix 13
AB4
B
1587 1607Right-handed alpha
Helix 14
AB5
B
1607 1632Right-handed alpha
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There are no sheets in PDB entry 4YYM
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il