Analysis of interatomic Contacts of Structural Units in PDB entry:
4YYQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YYQ entry

There are 4 chains in PDB entry 4YYQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1SER 24
A
 TRP 26LYS 216
B
 LEU 1SER 24
B
 TRP 26LYS 216
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 4YYQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 11Right-handed 310
Helix 2
AA2
A
24 43Right-handed alpha
Helix 3
AA3
A
49 57Right-handed alpha
Helix 4
AA4
A
59 63Right-handed 310
Helix 5
AA5
A
69 81Right-handed alpha
Helix 6
AA6
A
118 129Right-handed alpha
Helix 7
AA7
A
139 144Right-handed alpha
Helix 8
AA8
A
203 207Right-handed 310
Helix 9
AA9
B
8 11Right-handed 310
Helix 10
AB1
B
24 43Right-handed alpha
Helix 11
AB2
B
49 57Right-handed alpha
Helix 12
AB3
B
59 63Right-handed 310
Helix 13
AB4
B
69 80Right-handed alpha
Helix 14
AB5
B
118 129Right-handed alpha
Helix 15
AB6
B
139 145Right-handed alpha
Helix 16
AB7
B
203 207Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 4YYQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
160 170anti-parallel
Strand 3
A
131 135anti-parallel
Strand 4
A
211 215anti-parallel
Strand 5
A
110 113anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
160 170anti-parallel
Strand 3
A
173 179anti-parallel
Strand 4
A
191 195anti-parallel
Strand 5
A
149 150parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
160 170anti-parallel
Strand 3
B
131 135anti-parallel
Strand 4
B
211 215anti-parallel
Strand 5
B
110 113anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
160 170anti-parallel
Strand 3
B
173 179anti-parallel
Strand 4
B
191 195anti-parallel
Strand 5
B
149 150parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il