Analysis of interatomic Contacts of Structural Units in PDB entry:
4YZ9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YZ9 entry

There are 3 chains in PDB entry 4YZ9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 562GLU 964
B
 VAL 563HIS 963
C
 SER 562GLU 964
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 69 helices in PDB entry 4YZ9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
602 604Right-handed 310
Helix 2
AA2
A
605 618Right-handed alpha
Helix 3
AA3
A
649 656Right-handed alpha
Helix 4
AA4
A
657 662Right-handed 310
Helix 5
AA5
A
664 682Right-handed alpha
Helix 6
AA6
A
753 769Right-handed alpha
Helix 7
AA7
A
777 779Right-handed 310
Helix 8
AA8
A
780 788Right-handed alpha
Helix 9
AA9
A
799 813Right-handed alpha
Helix 10
AB1
A
816 820Right-handed 310
Helix 11
AB2
A
822 828Right-handed alpha
Helix 12
AB3
A
829 833Right-handed 310
Helix 13
AB4
A
834 850Right-handed alpha
Helix 14
AB5
A
856 866Right-handed alpha
Helix 15
AB6
A
866 871Right-handed alpha
Helix 16
AB7
A
879 888Right-handed alpha
Helix 17
AB8
A
896 910Right-handed alpha
Helix 18
AB9
A
911 914Right-handed 310
Helix 19
AC1
A
915 923Right-handed alpha
Helix 20
AC2
A
926 937Right-handed alpha
Helix 21
AC3
A
939 948Right-handed alpha
Helix 22
AC4
A
949 952Right-handed 310
Helix 23
AC5
A
954 958Right-handed 310
Helix 24
AC6
B
602 604Right-handed 310
Helix 25
AC7
B
605 619Right-handed alpha
Helix 26
AC8
B
649 656Right-handed alpha
Helix 27
AC9
B
657 660Right-handed 310
Helix 28
AD1
B
664 682Right-handed alpha
Helix 29
AD2
B
739 743Right-handed 310
Helix 30
AD3
B
753 769Right-handed alpha
Helix 31
AD4
B
780 787Right-handed alpha
Helix 32
AD5
B
799 813Right-handed alpha
Helix 33
AD6
B
816 820Right-handed 310
Helix 34
AD7
B
822 829Right-handed alpha
Helix 35
AD8
B
830 833Right-handed 310
Helix 36
AD9
B
834 849Right-handed alpha
Helix 37
AE1
B
856 865Right-handed alpha
Helix 38
AE2
B
879 886Right-handed alpha
Helix 39
AE3
B
896 910Right-handed alpha
Helix 40
AE4
B
911 914Right-handed 310
Helix 41
AE5
B
915 923Right-handed alpha
Helix 42
AE6
B
926 937Right-handed alpha
Helix 43
AE7
B
939 948Right-handed alpha
Helix 44
AE8
B
949 952Right-handed 310
Helix 45
AE9
B
957 961Right-handed 310
Helix 46
AF1
C
581 583Right-handed 310
Helix 47
AF2
C
602 604Right-handed 310
Helix 48
AF3
C
605 619Right-handed alpha
Helix 49
AF4
C
649 655Right-handed alpha
Helix 50
AF5
C
664 682Right-handed alpha
Helix 51
AF6
C
690 692Right-handed 310
Helix 52
AF7
C
739 744Right-handed alpha
Helix 53
AF8
C
753 769Right-handed alpha
Helix 54
AF9
C
780 788Right-handed alpha
Helix 55
AG1
C
799 813Right-handed alpha
Helix 56
AG2
C
816 820Right-handed 310
Helix 57
AG3
C
822 828Right-handed alpha
Helix 58
AG4
C
829 833Right-handed 310
Helix 59
AG5
C
834 851Right-handed alpha
Helix 60
AG6
C
856 864Right-handed alpha
Helix 61
AG7
C
865 870Right-handed alpha
Helix 62
AG8
C
879 888Right-handed alpha
Helix 63
AG9
C
896 910Right-handed alpha
Helix 64
AH1
C
911 914Right-handed 310
Helix 65
AH2
C
915 922Right-handed alpha
Helix 66
AH3
C
926 937Right-handed alpha
Helix 67
AH4
C
939 948Right-handed alpha
Helix 68
AH5
C
949 952Right-handed 310
Helix 69
AH6
C
954 961Right-handed 310
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There are 7 sheets in PDB entry 4YZ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
564 565first strand
Strand 2
A
569 580anti-parallel
Strand 3
A
584 591anti-parallel
Strand 4
A
594 601anti-parallel
Strand 5
A
638 642anti-parallel
Strand 6
A
628 633anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
645 648first strand
Strand 2
A
694 697anti-parallel
Strand 3
A
707 709anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
564 565first strand
Strand 2
B
569 580anti-parallel
Strand 3
B
584 591anti-parallel
Strand 4
B
594 601anti-parallel
Strand 5
B
638 643anti-parallel
Strand 6
B
628 633anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
564 565first strand
Strand 2
B
569 580anti-parallel
Strand 3
B
713 714anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
645 648first strand
Strand 2
B
694 697anti-parallel
Strand 3
B
707 709anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
564 566first strand
Strand 2
C
569 580anti-parallel
Strand 3
C
584 591anti-parallel
Strand 4
C
594 601anti-parallel
Strand 5
C
638 643anti-parallel
Strand 6
C
628 633anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
647 648first strand
Strand 2
C
694 696anti-parallel
Strand 3
C
707 709anti-parallel
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