Analysis of interatomic Contacts of Structural Units in PDB entry:
4YZK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YZK entry

There is 1 chain in PDB entry 4YZK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 34TYR 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 4YZK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 62Right-handed alpha
Helix 2
AA2
A
70 80Right-handed alpha
Helix 3
AA3
A
82 86Right-handed 310
Helix 4
AA4
A
128 144Right-handed alpha
Helix 5
AA5
A
151 158Right-handed alpha
Helix 6
AA6
A
159 161Right-handed 310
Helix 7
AA7
A
196 198Right-handed 310
Helix 8
AA8
A
199 211Right-handed alpha
Helix 9
AA9
A
213 224Right-handed alpha
Helix 10
AB1
A
229 232Right-handed 310
Helix 11
AB2
A
259 266Right-handed alpha
Helix 12
AB3
A
276 287Right-handed alpha
Helix 13
AB4
A
291 297Right-handed alpha
Helix 14
AB5
A
326 341Right-handed alpha
Helix 15
AB6
A
344 356Right-handed alpha
Helix 16
AB7
A
359 363Right-handed 310
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There is 1 sheet (AA1) in PDB entry 4YZK.

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 112first strand
Strand 2
A
115 122anti-parallel
Strand 3
A
172 177anti-parallel
Strand 4
A
185 190anti-parallel
Strand 5
A
233 240anti-parallel
Strand 6
A
248 254anti-parallel
Strand 7
A
300 305anti-parallel
Strand 8
A
313 319anti-parallel
Strand 9
A
366 372anti-parallel
Strand 10
A
378 383anti-parallel
Strand 11
A
105 112anti-parallel
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