Analysis of interatomic Contacts of Structural Units in PDB entry:
4YZR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YZR entry

There is 1 chain in PDB entry 4YZR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 5LYS 405
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 4YZR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 16Right-handed alpha
Helix 2
AA2
A
16 28Right-handed alpha
Helix 3
AA3
A
49 59Right-handed alpha
Helix 4
AA4
A
65 70Right-handed 310
Helix 5
AA5
A
84 89Right-handed 310
Helix 6
AA6
A
90 94Right-handed 310
Helix 7
AA7
A
97 107Right-handed alpha
Helix 8
AA8
A
108 110Right-handed 310
Helix 9
AA9
A
111 117Right-handed alpha
Helix 10
AB1
A
118 134Right-handed alpha
Helix 11
AB2
A
141 145Right-handed alpha
Helix 12
AB3
A
147 159Right-handed alpha
Helix 13
AB4
A
161 163Right-handed 310
Helix 14
AB5
A
164 176Right-handed alpha
Helix 15
AB6
A
179 181Right-handed 310
Helix 16
AB7
A
182 207Right-handed alpha
Helix 17
AB8
A
211 219Right-handed alpha
Helix 18
AB9
A
227 260Right-handed alpha
Helix 19
AC1
A
260 270Right-handed alpha
Helix 20
AC2
A
273 286Right-handed alpha
Helix 21
AC3
A
316 321Right-handed alpha
Helix 22
AC4
A
354 373Right-handed alpha
Helix 23
AC5
A
381 385Right-handed 310
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There are 4 sheets in PDB entry 4YZR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 35first strand
Strand 2
A
42 47anti-parallel
Strand 3
A
312 315parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 63first strand
Strand 2
A
295 296anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 140first strand
Strand 2
A
400 402anti-parallel
Strand 3
A
377 378anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 302first strand
Strand 2
A
305 307anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il