Analysis of interatomic Contacts of Structural Units in PDB entry:
4Z19


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Z19 entry

There are 2 chains in PDB entry 4Z19 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 111
A
 ALA 113PHE 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 4Z19. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 27Right-handed alpha
Helix 2
AA2
A
29 38Right-handed alpha
Helix 3
AA3
A
50 67Right-handed alpha
Helix 4
AA4
A
69 71Right-handed 310
Helix 5
AA5
A
89 99Right-handed alpha
Helix 6
AA6
A
110 112Right-handed 310
Helix 7
AA7
A
113 128Right-handed alpha
Helix 8
AA8
A
141 146Right-handed 310
Helix 9
AA9
A
150 155Right-handed alpha
Helix 10
AB1
A
183 187Right-handed 310
Helix 11
AB2
A
207 230Right-handed alpha
Helix 12
AB3
A
233 237Right-handed 310
Helix 13
AB4
A
246 258Right-handed alpha
Helix 14
AB5
A
260 264Right-handed 310
Helix 15
AB6
A
267 272Right-handed alpha
Helix 16
AB7
A
274 276Right-handed 310
Helix 17
AB8
A
277 289Right-handed alpha
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There are 4 sheets in PDB entry 4Z19. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 11first strand
Strand 2
A
160 169anti-parallel
Strand 3
A
133 140anti-parallel
Strand 4
A
73 79parallel
Strand 5
A
104 108parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 18first strand
Strand 2
A
41 44anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 181first strand
Strand 2
A
308 315anti-parallel
Strand 3
A
297 304anti-parallel
Strand 4
A
239 242parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 190first strand
Strand 2
A
205 206anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il