Analysis of interatomic Contacts of Structural Units in PDB entry:
4Z24

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4Z24 entry

There are 2 chains in PDB entry 4Z24 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 4	ASN 652
B	ASN 4	ASN 652

There are 50 helices in PDB entry 4Z24. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	29	Right-handed alpha
Helix 2	AA2	A	45	50	Right-handed alpha
Helix 3	AA3	A	51	56	Right-handed 310
Helix 4	AA4	A	60	64	Right-handed 310
Helix 5	AA5	A	66	70	Right-handed 310
Helix 6	AA6	A	99	104	Right-handed 310
Helix 7	AA7	A	113	121	Right-handed alpha
Helix 8	AA8	A	126	142	Right-handed alpha
Helix 9	AA9	A	150	171	Right-handed alpha
Helix 10	AB1	A	179	183	Right-handed 310
Helix 11	AB2	A	231	237	Right-handed alpha
Helix 12	AB3	A	249	253	Right-handed 310
Helix 13	AB4	A	302	310	Right-handed alpha
Helix 14	AB5	A	314	321	Right-handed alpha
Helix 15	AB6	A	352	360	Right-handed alpha
Helix 16	AB7	A	410	418	Right-handed alpha
Helix 17	AB8	A	470	482	Right-handed alpha
Helix 18	AB9	A	482	509	Right-handed alpha
Helix 19	AC1	A	521	536	Right-handed alpha
Helix 20	AC2	A	537	543	Right-handed 310
Helix 21	AC3	A	544	549	Right-handed alpha
Helix 22	AC4	A	552	566	Right-handed alpha
Helix 23	AC5	A	566	572	Right-handed alpha
Helix 24	AC6	A	605	609	Right-handed 310
Helix 25	AC7	A	617	634	Right-handed alpha
Helix 26	AC8	A	636	641	Right-handed alpha
Helix 27	AC9	B	15	29	Right-handed alpha
Helix 28	AD1	B	45	50	Right-handed alpha
Helix 29	AD2	B	51	56	Right-handed 310
Helix 30	AD3	B	66	70	Right-handed 310
Helix 31	AD4	B	99	104	Right-handed 310
Helix 32	AD5	B	113	121	Right-handed alpha
Helix 33	AD6	B	126	142	Right-handed alpha
Helix 34	AD7	B	150	171	Right-handed alpha
Helix 35	AD8	B	179	183	Right-handed 310
Helix 36	AD9	B	231	238	Right-handed alpha
Helix 37	AE1	B	249	253	Right-handed 310
Helix 38	AE2	B	302	310	Right-handed alpha
Helix 39	AE3	B	314	321	Right-handed alpha
Helix 40	AE4	B	352	360	Right-handed alpha
Helix 41	AE5	B	410	418	Right-handed alpha
Helix 42	AE6	B	470	482	Right-handed alpha
Helix 43	AE7	B	482	509	Right-handed alpha
Helix 44	AE8	B	521	536	Right-handed alpha
Helix 45	AE9	B	537	543	Right-handed 310
Helix 46	AF1	B	544	549	Right-handed alpha
Helix 47	AF2	B	552	566	Right-handed alpha
Helix 48	AF3	B	566	572	Right-handed alpha
Helix 49	AF4	B	605	609	Right-handed 310
Helix 50	AF5	B	617	634	Right-handed alpha

There are 17 sheets in PDB entry 4Z24. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	258	first strand
Strand 2	A	33	36	parallel
Strand 3	A	5	12	parallel
Strand 4	A	285	296	parallel
Strand 5	A	272	279	anti-parallel
Strand 6	A	262	269	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	258	first strand
Strand 2	A	33	36	parallel
Strand 3	A	5	12	parallel
Strand 4	A	285	296	parallel
Strand 5	A	601	603	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	78	first strand
Strand 2	A	91	95	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	145	first strand
Strand 2	A	216	217	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	212	first strand
Strand 2	A	375	378	anti-parallel
Strand 3	A	399	405	anti-parallel
Strand 4	A	426	433	anti-parallel
Strand 5	A	341	351	anti-parallel
Strand 6	A	513	519	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	212	first strand
Strand 2	A	375	378	anti-parallel
Strand 3	A	399	405	anti-parallel
Strand 4	A	426	433	anti-parallel
Strand 5	A	341	351	anti-parallel
Strand 6	A	573	575	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	221	first strand
Strand 2	A	227	229	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	313	first strand
Strand 2	A	328	329	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	337	first strand
Strand 2	A	440	443	anti-parallel
Strand 3	A	455	457	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	258	first strand
Strand 2	B	33	36	parallel
Strand 3	B	6	12	parallel
Strand 4	B	285	296	parallel
Strand 5	B	272	279	anti-parallel
Strand 6	B	262	269	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	258	first strand
Strand 2	B	33	36	parallel
Strand 3	B	6	12	parallel
Strand 4	B	285	296	parallel
Strand 5	B	601	603	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	78	first strand
Strand 2	B	91	95	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	212	first strand
Strand 2	B	375	378	anti-parallel
Strand 3	B	399	405	anti-parallel
Strand 4	B	426	433	anti-parallel
Strand 5	B	341	351	anti-parallel
Strand 6	B	513	519	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	212	first strand
Strand 2	B	375	378	anti-parallel
Strand 3	B	399	405	anti-parallel
Strand 4	B	426	433	anti-parallel
Strand 5	B	341	351	anti-parallel
Strand 6	B	573	575	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	221	first strand
Strand 2	B	227	229	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	313	first strand
Strand 2	B	328	329	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	335	337	first strand
Strand 2	B	440	443	anti-parallel
Strand 3	B	455	457	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4Z24

Analysis of interatomic Contacts of Structural Units in PDB entry:
4Z24