Analysis of interatomic Contacts of Structural Units in PDB entry:
4Z5P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Z5P entry

There are 2 chains in PDB entry 4Z5P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 7TRP 399
B
 VAL 7TRP 399
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 4Z5P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 32Right-handed alpha
Helix 2
AA2
A
50 60Right-handed alpha
Helix 3
AA3
A
84 88Right-handed 310
Helix 4
AA4
A
91 101Right-handed alpha
Helix 5
AA5
A
105 111Right-handed alpha
Helix 6
AA6
A
112 131Right-handed alpha
Helix 7
AA7
A
136 140Right-handed alpha
Helix 8
AA8
A
140 154Right-handed alpha
Helix 9
AA9
A
156 158Right-handed 310
Helix 10
AB1
A
159 172Right-handed alpha
Helix 11
AB2
A
177 202Right-handed alpha
Helix 12
AB3
A
206 214Right-handed alpha
Helix 13
AB4
A
222 238Right-handed alpha
Helix 14
AB5
A
238 254Right-handed alpha
Helix 15
AB6
A
255 265Right-handed alpha
Helix 16
AB7
A
268 280Right-handed alpha
Helix 17
AB8
A
312 317Right-handed alpha
Helix 18
AB9
A
350 369Right-handed alpha
Helix 19
AC1
A
377 381Right-handed 310
Helix 20
AC2
B
22 32Right-handed alpha
Helix 21
AC3
B
50 60Right-handed alpha
Helix 22
AC4
B
84 88Right-handed 310
Helix 23
AC5
B
91 101Right-handed alpha
Helix 24
AC6
B
105 111Right-handed alpha
Helix 25
AC7
B
112 131Right-handed alpha
Helix 26
AC8
B
136 140Right-handed alpha
Helix 27
AC9
B
140 154Right-handed alpha
Helix 28
AD1
B
156 158Right-handed 310
Helix 29
AD2
B
159 172Right-handed alpha
Helix 30
AD3
B
177 202Right-handed alpha
Helix 31
AD4
B
206 214Right-handed alpha
Helix 32
AD5
B
222 238Right-handed alpha
Helix 33
AD6
B
238 254Right-handed alpha
Helix 34
AD7
B
255 265Right-handed alpha
Helix 35
AD8
B
268 280Right-handed alpha
Helix 36
AD9
B
312 317Right-handed alpha
Helix 37
AE1
B
350 369Right-handed alpha
Helix 38
AE2
B
377 381Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 4Z5P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
35 38parallel
Strand 3
A
44 47anti-parallel
Strand 4
A
308 310parallel
Strand 5
A
290 292anti-parallel
Strand 6
A
63 64anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
396 398anti-parallel
Strand 3
A
373 374anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 298first strand
Strand 2
A
301 303anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 9first strand
Strand 2
B
35 38parallel
Strand 3
B
44 47anti-parallel
Strand 4
B
308 310parallel
Strand 5
B
290 292anti-parallel
Strand 6
B
63 64anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 135first strand
Strand 2
B
396 398anti-parallel
Strand 3
B
373 374anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
296 298first strand
Strand 2
B
301 303anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il