Analysis of interatomic Contacts of Structural Units in PDB entry:
4Z5Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Z5Q entry

There is 1 chain in PDB entry 4Z5Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 10TRP 400
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 4Z5Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
54 64Right-handed alpha
Helix 2
AA2
A
69 75Right-handed 310
Helix 3
AA3
A
88 92Right-handed 310
Helix 4
AA4
A
95 108Right-handed alpha
Helix 5
AA5
A
109 115Right-handed alpha
Helix 6
AA6
A
116 135Right-handed alpha
Helix 7
AA7
A
140 144Right-handed alpha
Helix 8
AA8
A
146 158Right-handed alpha
Helix 9
AA9
A
160 166Right-handed 310
Helix 10
AB1
A
167 176Right-handed alpha
Helix 11
AB2
A
181 206Right-handed alpha
Helix 12
AB3
A
210 218Right-handed alpha
Helix 13
AB4
A
226 259Right-handed alpha
Helix 14
AB5
A
259 269Right-handed alpha
Helix 15
AB6
A
272 284Right-handed alpha
Helix 16
AB7
A
316 321Right-handed alpha
Helix 17
AB8
A
347 351Right-handed 310
Helix 18
AB9
A
354 373Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 4Z5Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
39 42parallel
Strand 3
A
49 52anti-parallel
Strand 4
A
312 315parallel
Strand 5
A
294 296anti-parallel
Strand 6
A
67 68anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 139first strand
Strand 2
A
397 399anti-parallel
Strand 3
A
377 380anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 302first strand
Strand 2
A
305 307anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il