Analysis of interatomic Contacts of Structural Units in PDB entry:
4Z88

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4Z88 entry

There are 24 chains in PDB entry 4Z88 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 1318	GLU 1382
B	PHE 1317	GLU 1382
C	PHE 1317	VAL 1381
D	GLY 1313	GLU 1382
E	TYR 1319	VAL 1381
F	SER 1314	GLU 1380
G	PRO 1315	VAL 1381
H	GLY 1313	GLU 1382
I	PHE 1317	GLU 1382
J	SER 1314	VAL 1381
K	GLU 1316	VAL 1381
L	SER 1314	VAL 1381
M	ARG 153	LYS 163
N	LEU 155	PRO 159
O	LYS 154	LYS 163
P	ARG 152	PRO 159
Q	ARG 151	LYS 163
R	ARG 153	PRO 159
S	ARG 151	LYS 163
T	ARG 152	PRO 156
U	ARG 152	LYS 163
V	ARG 152	ILE 158
W	ARG 152	LYS 163
X	ARG 152	ILE 158

There are 27 helices in PDB entry 4Z88. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1327	1332	Right-handed alpha
Helix 2	AA2	A	1336	1341	Right-handed alpha
Helix 3	AA3	B	1327	1332	Right-handed alpha
Helix 4	AA4	B	1336	1341	Right-handed alpha
Helix 5	AA5	C	1327	1332	Right-handed alpha
Helix 6	AA6	C	1336	1341	Right-handed alpha
Helix 7	AA7	D	1327	1332	Right-handed alpha
Helix 8	AA8	D	1336	1341	Right-handed alpha
Helix 9	AA9	E	1327	1332	Right-handed alpha
Helix 10	AB1	E	1336	1341	Right-handed alpha
Helix 11	AB2	F	1327	1332	Right-handed alpha
Helix 12	AB3	F	1336	1341	Right-handed alpha
Helix 13	AB4	G	1327	1332	Right-handed alpha
Helix 14	AB5	G	1336	1341	Right-handed alpha
Helix 15	AB6	H	1327	1332	Right-handed alpha
Helix 16	AB7	H	1336	1341	Right-handed alpha
Helix 17	AB8	I	1327	1332	Right-handed alpha
Helix 18	AB9	I	1336	1341	Right-handed alpha
Helix 19	AC1	J	1327	1332	Right-handed alpha
Helix 20	AC2	J	1336	1341	Right-handed alpha
Helix 21	AC3	K	1327	1332	Right-handed alpha
Helix 22	AC4	K	1336	1341	Right-handed alpha
Helix 23	AC5	L	1327	1332	Right-handed alpha
Helix 24	AC6	L	1336	1341	Right-handed alpha
Helix 25	AC7	O	159	163	Right-handed 310
Helix 26	AC8	Q	159	163	Right-handed 310
Helix 27	AC9	W	159	163	Right-handed 310

There are 12 sheets in PDB entry 4Z88. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1369	1374	first strand
Strand 2	A	1361	1366	anti-parallel
Strand 3	A	1349	1353	anti-parallel
Strand 4	A	1319	1322	anti-parallel
Strand 5	A	1378	1380	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1369	1374	first strand
Strand 2	B	1361	1366	anti-parallel
Strand 3	B	1349	1353	anti-parallel
Strand 4	B	1318	1322	anti-parallel
Strand 5	B	1378	1379	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1369	1374	first strand
Strand 2	C	1361	1366	anti-parallel
Strand 3	C	1349	1353	anti-parallel
Strand 4	C	1318	1322	anti-parallel
Strand 5	C	1378	1380	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1369	1374	first strand
Strand 2	D	1361	1366	anti-parallel
Strand 3	D	1349	1353	anti-parallel
Strand 4	D	1318	1322	anti-parallel
Strand 5	D	1378	1380	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1369	1374	first strand
Strand 2	E	1361	1366	anti-parallel
Strand 3	E	1349	1353	anti-parallel
Strand 4	E	1320	1322	anti-parallel
Strand 5	E	1378	1380	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1369	1374	first strand
Strand 2	F	1361	1366	anti-parallel
Strand 3	F	1349	1353	anti-parallel
Strand 4	F	1318	1322	anti-parallel
Strand 5	F	1378	1379	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1369	1374	first strand
Strand 2	G	1361	1366	anti-parallel
Strand 3	G	1349	1353	anti-parallel
Strand 4	G	1318	1322	anti-parallel
Strand 5	G	1378	1380	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	1369	1374	first strand
Strand 2	H	1361	1366	anti-parallel
Strand 3	H	1349	1353	anti-parallel
Strand 4	H	1318	1322	anti-parallel
Strand 5	H	1378	1380	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1369	1374	first strand
Strand 2	I	1361	1366	anti-parallel
Strand 3	I	1349	1353	anti-parallel
Strand 4	I	1318	1322	anti-parallel
Strand 5	I	1378	1380	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1369	1374	first strand
Strand 2	J	1361	1366	anti-parallel
Strand 3	J	1349	1353	anti-parallel
Strand 4	J	1318	1322	anti-parallel
Strand 5	J	1378	1380	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	1369	1374	first strand
Strand 2	K	1361	1366	anti-parallel
Strand 3	K	1349	1353	anti-parallel
Strand 4	K	1318	1322	anti-parallel
Strand 5	K	1378	1380	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1369	1374	first strand
Strand 2	L	1361	1366	anti-parallel
Strand 3	L	1349	1353	anti-parallel
Strand 4	L	1318	1322	anti-parallel
Strand 5	L	1378	1380	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4Z88

Analysis of interatomic Contacts of Structural Units in PDB entry:
4Z88