Analysis of interatomic Contacts of Structural Units in PDB entry:
4Z8D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Z8D entry

There are 2 chains in PDB entry 4Z8D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1PHE 317
B
MET 1PHE 317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 4Z8D. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
19 24Right-handed alpha
Helix 2
AA2
A
29 38Right-handed alpha
Helix 3
AA3
A
50 67Right-handed alpha
Helix 4
AA4
A
69 73Right-handed 310
Helix 5
AA5
A
89 99Right-handed alpha
Helix 6
AA6
A
110 112Right-handed 310
Helix 7
AA7
A
113 128Right-handed alpha
Helix 8
AA8
A
141 146Right-handed alpha
Helix 9
AA9
A
183 187Right-handed 310
Helix 10
AB1
A
208 231Right-handed alpha
Helix 11
AB2
A
234 238Right-handed 310
Helix 12
AB3
A
247 258Right-handed alpha
Helix 13
AB4
A
261 265Right-handed 310
Helix 14
AB5
A
268 273Right-handed alpha
Helix 15
AB6
A
275 277Right-handed 310
Helix 16
AB7
A
278 290Right-handed alpha
Helix 17
AB8
B
19 26Right-handed alpha
Helix 18
AB9
B
29 38Right-handed alpha
Helix 19
AC1
B
50 67Right-handed alpha
Helix 20
AC2
B
69 73Right-handed 310
Helix 21
AC3
B
89 98Right-handed alpha
Helix 22
AC4
B
110 112Right-handed 310
Helix 23
AC5
B
113 128Right-handed alpha
Helix 24
AC6
B
142 146Right-handed alpha
Helix 25
AC7
B
150 155Right-handed alpha
Helix 26
AC8
B
183 187Right-handed 310
Helix 27
AC9
B
208 231Right-handed alpha
Helix 28
AD1
B
234 238Right-handed 310
Helix 29
AD2
B
247 259Right-handed alpha
Helix 30
AD3
B
261 265Right-handed 310
Helix 31
AD4
B
268 273Right-handed alpha
Helix 32
AD5
B
275 277Right-handed 310
Helix 33
AD6
B
278 290Right-handed alpha
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There are 7 sheets in PDB entry 4Z8D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2 11first strand
Strand 2
A
160 169anti-parallel
Strand 3
A
133 140anti-parallel
Strand 4
A
75 79parallel
Strand 5
A
105 109parallel
Strand 6
B
105 109anti-parallel
Strand 7
B
75 79parallel
Strand 8
B
133 141parallel
Strand 9
B
159 169anti-parallel
Strand 10
B
2 11anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
15 18first strand
Strand 2
A
41 44anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
85 87first strand
Strand 2
B
189 192anti-parallel
Strand 3
B
206 207anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
174 181first strand
Strand 2
A
309 316anti-parallel
Strand 3
A
298 305anti-parallel
Strand 4
A
240 243parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
206 207first strand
Strand 2
A
189 192anti-parallel
Strand 3
B
85 87anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
15 18first strand
Strand 2
B
41 44anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
174 181first strand
Strand 2
B
309 316anti-parallel
Strand 3
B
298 305anti-parallel
Strand 4
B
240 242parallel
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