Analysis of interatomic Contacts of Structural Units in PDB entry:
4Z8M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Z8M entry

There are 4 chains in PDB entry 4Z8M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 350THR 501
B
 ASN 350HIS 507
C
 HIS 601LYS 609
D
 GLY 602TYR 608
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 4Z8M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
359 369Right-handed alpha
Helix 2
AA2
A
418 422Right-handed 310
Helix 3
AA3
A
480 485Right-handed 310
Helix 4
AA4
B
359 369Right-handed alpha
Helix 5
AA5
B
418 422Right-handed 310
Helix 6
AA6
B
456 460Right-handed 310
Helix 7
AA7
B
480 485Right-handed 310
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There are 7 sheets in PDB entry 4Z8M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 357first strand
Strand 2
A
492 500anti-parallel
Strand 3
A
428 434anti-parallel
Strand 4
A
446 452anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 357first strand
Strand 2
A
492 500anti-parallel
Strand 3
A
488 489anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 376first strand
Strand 2
A
388 395anti-parallel
Strand 3
A
380 381anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 376first strand
Strand 2
A
388 395anti-parallel
Strand 3
A
406 414anti-parallel
Strand 4
A
469 478anti-parallel
Strand 5
C
604 607anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
351 357first strand
Strand 2
B
493 500anti-parallel
Strand 3
B
428 434anti-parallel
Strand 4
B
446 452anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
373 376first strand
Strand 2
B
388 395anti-parallel
Strand 3
B
380 381anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
373 376first strand
Strand 2
B
388 395anti-parallel
Strand 3
B
406 414anti-parallel
Strand 4
B
469 478anti-parallel
Strand 5
D
604 607anti-parallel
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