Analysis of interatomic Contacts of Structural Units in PDB entry:
4Z8S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Z8S entry

There are 2 chains in PDB entry 4Z8S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 1PRO 247
B
 ASN 1TYR 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 4Z8S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 9Right-handed 310
Helix 2
AA2
A
10 26Right-handed alpha
Helix 3
AA3
A
44 47Right-handed 310
Helix 4
AA4
A
91 95Right-handed 310
Helix 5
AA5
A
110 119Right-handed alpha
Helix 6
AA6
A
121 125Right-handed 310
Helix 7
AA7
A
128 141Right-handed alpha
Helix 8
AA8
A
146 164Right-handed alpha
Helix 9
AA9
A
164 177Right-handed alpha
Helix 10
AB1
A
184 204Right-handed alpha
Helix 11
AB2
A
205 207Right-handed 310
Helix 12
AB3
A
232 237Right-handed alpha
Helix 13
AB4
B
1 5Right-handed 310
Helix 14
AB5
B
15 19Right-handed 310
Helix 15
AB6
B
25 27Right-handed 310
Helix 16
AB7
B
42 46Right-handed 310
Helix 17
AB8
B
77 82Right-handed 310
Helix 18
AB9
B
123 127Right-handed 310
Helix 19
AC1
B
144 146Right-handed 310
Helix 20
AC2
B
167 170Right-handed 310
Helix 21
AC3
B
209 213Right-handed 310
Helix 22
AC4
B
235 241Right-handed 310
Helix 23
AC5
B
252 256Right-handed 310
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There are 9 sheets in PDB entry 4Z8S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
49 55parallel
Strand 3
A
61 67anti-parallel
Strand 4
A
72 78anti-parallel
Strand 5
A
81 84anti-parallel
Strand 6
A
101 104parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 218first strand
Strand 2
A
224 229anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 11first strand
Strand 2
B
47 49anti-parallel
Strand 3
B
55 57anti-parallel
Strand 4
B
60 64anti-parallel
Strand 5
B
73 76anti-parallel
Strand 6
B
32 37anti-parallel
Strand 7
B
20 23anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 14first strand
Strand 2
B
129 130anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 89first strand
Strand 2
B
95 97anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 105first strand
Strand 2
B
116 118anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 161first strand
Strand 2
B
147 152anti-parallel
Strand 3
B
137 143anti-parallel
Strand 4
B
172 174anti-parallel
Strand 5
B
180 182anti-parallel
Strand 6
B
185 191anti-parallel
Strand 7
B
202 205anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 161first strand
Strand 2
B
147 152anti-parallel
Strand 3
B
137 143anti-parallel
Strand 4
B
258 260anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 216first strand
Strand 2
B
222 224anti-parallel
Strand 3
B
229 233anti-parallel
Strand 4
B
243 246anti-parallel
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