Analysis of interatomic Contacts of Structural Units in PDB entry:
4ZBD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4ZBD entry

There are 2 chains in PDB entry 4ZBD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2SER 220
B
 SER 2SER 220
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 4ZBD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 28Right-handed alpha
Helix 2
AA2
A
42 45Right-handed 310
Helix 3
AA3
A
46 51Right-handed alpha
Helix 4
AA4
A
73 86Right-handed alpha
Helix 5
AA5
A
97 114Right-handed alpha
Helix 6
AA6
A
114 127Right-handed alpha
Helix 7
AA7
A
132 155Right-handed alpha
Helix 8
AA8
A
166 171Right-handed alpha
Helix 9
AA9
A
172 182Right-handed alpha
Helix 10
AB1
A
187 193Right-handed alpha
Helix 11
AB2
A
193 205Right-handed alpha
Helix 12
AB3
A
206 220Right-handed alpha
Helix 13
AB4
B
15 28Right-handed alpha
Helix 14
AB5
B
38 45Right-handed 310
Helix 15
AB6
B
46 51Right-handed alpha
Helix 16
AB7
B
73 86Right-handed alpha
Helix 17
AB8
B
97 114Right-handed alpha
Helix 18
AB9
B
114 127Right-handed alpha
Helix 19
AC1
B
132 155Right-handed alpha
Helix 20
AC2
B
166 172Right-handed alpha
Helix 21
AC3
B
172 182Right-handed alpha
Helix 22
AC4
B
187 193Right-handed alpha
Helix 23
AC5
B
193 205Right-handed alpha
Helix 24
AC6
B
206 220Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 4ZBD. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 36first strand
Strand 2
A
7 11parallel
Strand 3
A
60 63anti-parallel
Strand 4
A
70 72anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 36first strand
Strand 2
B
7 11parallel
Strand 3
B
60 63anti-parallel
Strand 4
B
70 72anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il