Analysis of interatomic Contacts of Structural Units in PDB entry:
4ZBE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4ZBE entry

There is 1 chain in PDB entry 4ZBE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
THR 26GLY 289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 4ZBE. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
30 41Right-handed alpha
Helix 2
AA2
A
70 84Right-handed alpha
Helix 3
AA3
A
97 101Right-handed 310
Helix 4
AA4
A
105 111Right-handed alpha
Helix 5
AA5
A
118 128Right-handed alpha
Helix 6
AA6
A
130 141Right-handed alpha
Helix 7
AA7
A
142 154Right-handed alpha
Helix 8
AA8
A
166 170Right-handed 310
Helix 9
AA9
A
181 194Right-handed alpha
Helix 10
AB1
A
199 212Right-handed alpha
Helix 11
AB2
A
219 224Right-handed 310
Helix 12
AB3
A
238 241Right-handed 310
Helix 13
AB4
A
273 288Right-handed alpha
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There are 3 sheets in PDB entry 4ZBE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
56 59first strand
Strand 2
A
43 50anti-parallel
Strand 3
A
257 264anti-parallel
Strand 4
A
243 250anti-parallel
Strand 5
A
229 236anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
65 66first strand
Strand 2
A
179 180anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
93 94first strand
Strand 2
A
116 117anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il