Analysis of interatomic Contacts of Structural Units in PDB entry:
4ZCI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4ZCI entry

There are 2 chains in PDB entry 4ZCI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASN 601
B	MET 1	ASN 601

There are 30 helices in PDB entry 4ZCI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	28	Right-handed alpha
Helix 2	AA2	A	83	90	Right-handed alpha
Helix 3	AA3	A	106	108	Right-handed 310
Helix 4	AA4	A	109	119	Right-handed alpha
Helix 5	AA5	A	136	148	Right-handed alpha
Helix 6	AA6	A	153	158	Right-handed alpha
Helix 7	AA7	A	183	194	Right-handed alpha
Helix 8	AA8	A	327	336	Right-handed alpha
Helix 9	AA9	A	362	375	Right-handed alpha
Helix 10	AB1	A	411	422	Right-handed alpha
Helix 11	AB2	A	445	449	Right-handed alpha
Helix 12	AB3	A	450	459	Right-handed alpha
Helix 13	AB4	A	497	505	Right-handed alpha
Helix 14	AB5	A	564	572	Right-handed alpha
Helix 15	AB6	A	593	600	Right-handed alpha
Helix 16	AB7	B	17	28	Right-handed alpha
Helix 17	AB8	B	83	92	Right-handed alpha
Helix 18	AB9	B	106	108	Right-handed 310
Helix 19	AC1	B	109	119	Right-handed alpha
Helix 20	AC2	B	136	148	Right-handed alpha
Helix 21	AC3	B	153	158	Right-handed alpha
Helix 22	AC4	B	183	194	Right-handed alpha
Helix 23	AC5	B	329	336	Right-handed alpha
Helix 24	AC6	B	362	374	Right-handed alpha
Helix 25	AC7	B	411	421	Right-handed alpha
Helix 26	AC8	B	445	449	Right-handed alpha
Helix 27	AC9	B	450	459	Right-handed alpha
Helix 28	AD1	B	497	505	Right-handed alpha
Helix 29	AD2	B	564	572	Right-handed alpha
Helix 30	AD3	B	593	601	Right-handed alpha

There are 18 sheets in PDB entry 4ZCI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	65	first strand
Strand 2	A	68	74	anti-parallel
Strand 3	A	5	12	parallel
Strand 4	A	94	100	parallel
Strand 5	A	123	128	parallel
Strand 6	A	162	166	parallel
Strand 7	A	171	173	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	208	first strand
Strand 2	A	287	290	anti-parallel
Strand 3	A	236	240	anti-parallel
Strand 4	A	246	250	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	215	first strand
Strand 2	A	219	225	anti-parallel
Strand 3	A	273	276	anti-parallel
Strand 4	A	254	258	anti-parallel
Strand 5	A	261	265	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	231	first strand
Strand 2	A	268	269	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	349	first strand
Strand 2	A	355	360	anti-parallel
Strand 3	A	307	313	anti-parallel
Strand 4	A	380	382	anti-parallel
Strand 5	A	576	581	anti-parallel
Strand 6	A	584	589	anti-parallel
Strand 7	A	522	527	anti-parallel
Strand 8	A	508	510	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	386	387	first strand
Strand 2	A	307	313	anti-parallel
Strand 3	A	380	382	anti-parallel
Strand 4	A	576	581	anti-parallel
Strand 5	A	584	589	anti-parallel
Strand 6	A	522	527	anti-parallel
Strand 7	A	487	490	anti-parallel
Strand 8	A	533	535	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	392	first strand
Strand 2	A	395	408	anti-parallel
Strand 3	A	436	444	anti-parallel
Strand 4	A	425	431	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	392	first strand
Strand 2	A	395	408	anti-parallel
Strand 3	A	464	474	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	495	first strand
Strand 2	A	517	518	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	65	first strand
Strand 2	B	68	74	anti-parallel
Strand 3	B	5	12	parallel
Strand 4	B	94	100	parallel
Strand 5	B	122	128	parallel
Strand 6	B	162	166	parallel
Strand 7	B	171	173	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	208	first strand
Strand 2	B	287	290	anti-parallel
Strand 3	B	236	240	anti-parallel
Strand 4	B	246	250	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	211	215	first strand
Strand 2	B	219	225	anti-parallel
Strand 3	B	273	277	anti-parallel
Strand 4	B	254	258	anti-parallel
Strand 5	B	261	265	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	231	first strand
Strand 2	B	268	269	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	349	first strand
Strand 2	B	355	360	anti-parallel
Strand 3	B	307	313	anti-parallel
Strand 4	B	380	382	anti-parallel
Strand 5	B	576	581	anti-parallel
Strand 6	B	584	589	anti-parallel
Strand 7	B	522	527	anti-parallel
Strand 8	B	508	510	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	386	387	first strand
Strand 2	B	307	313	anti-parallel
Strand 3	B	380	382	anti-parallel
Strand 4	B	576	581	anti-parallel
Strand 5	B	584	589	anti-parallel
Strand 6	B	522	527	anti-parallel
Strand 7	B	487	490	anti-parallel
Strand 8	B	533	535	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	390	392	first strand
Strand 2	B	395	408	anti-parallel
Strand 3	B	436	444	anti-parallel
Strand 4	B	425	431	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	390	392	first strand
Strand 2	B	395	408	anti-parallel
Strand 3	B	464	474	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	494	496	first strand
Strand 2	B	515	518	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4ZCI

Analysis of interatomic Contacts of Structural Units in PDB entry:
4ZCI