Analysis of interatomic Contacts of Structural Units in PDB entry:
4ZD6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4ZD6 entry

There are 6 chains in PDB entry 4ZD6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 3	THR 227
B	ASN 3	THR 227
C	GLY 4	THR 227
D	GLY 4	THR 227
E	GLY 4	THR 227
F	ASN 3	THR 227

There are 58 helices in PDB entry 4ZD6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	31	Right-handed alpha
Helix 2	AA2	A	46	56	Right-handed alpha
Helix 3	AA3	A	79	91	Right-handed alpha
Helix 4	AA4	A	91	109	Right-handed alpha
Helix 5	AA5	A	118	122	Right-handed 310
Helix 6	AA6	A	128	151	Right-handed alpha
Helix 7	AA7	A	171	176	Right-handed alpha
Helix 8	AA8	A	177	188	Right-handed alpha
Helix 9	AA9	A	195	208	Right-handed alpha
Helix 10	AB1	B	20	31	Right-handed alpha
Helix 11	AB2	B	46	56	Right-handed alpha
Helix 12	AB3	B	79	91	Right-handed alpha
Helix 13	AB4	B	91	109	Right-handed alpha
Helix 14	AB5	B	118	122	Right-handed 310
Helix 15	AB6	B	128	151	Right-handed alpha
Helix 16	AB7	B	171	176	Right-handed alpha
Helix 17	AB8	B	177	187	Right-handed alpha
Helix 18	AB9	B	195	208	Right-handed alpha
Helix 19	AC1	C	20	31	Right-handed alpha
Helix 20	AC2	C	46	56	Right-handed alpha
Helix 21	AC3	C	74	78	Right-handed 310
Helix 22	AC4	C	79	91	Right-handed alpha
Helix 23	AC5	C	91	109	Right-handed alpha
Helix 24	AC6	C	118	122	Right-handed 310
Helix 25	AC7	C	128	151	Right-handed alpha
Helix 26	AC8	C	171	176	Right-handed alpha
Helix 27	AC9	C	177	188	Right-handed alpha
Helix 28	AD1	C	195	208	Right-handed alpha
Helix 29	AD2	D	20	31	Right-handed alpha
Helix 30	AD3	D	46	56	Right-handed alpha
Helix 31	AD4	D	74	78	Right-handed 310
Helix 32	AD5	D	79	91	Right-handed alpha
Helix 33	AD6	D	91	109	Right-handed alpha
Helix 34	AD7	D	118	122	Right-handed 310
Helix 35	AD8	D	128	151	Right-handed alpha
Helix 36	AD9	D	173	176	Right-handed 310
Helix 37	AE1	D	177	188	Right-handed alpha
Helix 38	AE2	D	195	208	Right-handed alpha
Helix 39	AE3	E	20	31	Right-handed alpha
Helix 40	AE4	E	46	56	Right-handed alpha
Helix 41	AE5	E	74	78	Right-handed 310
Helix 42	AE6	E	79	91	Right-handed alpha
Helix 43	AE7	E	91	109	Right-handed alpha
Helix 44	AE8	E	118	122	Right-handed 310
Helix 45	AE9	E	128	151	Right-handed alpha
Helix 46	AF1	E	171	176	Right-handed alpha
Helix 47	AF2	E	177	188	Right-handed alpha
Helix 48	AF3	E	195	208	Right-handed alpha
Helix 49	AF4	F	20	31	Right-handed alpha
Helix 50	AF5	F	46	56	Right-handed alpha
Helix 51	AF6	F	74	78	Right-handed 310
Helix 52	AF7	F	79	91	Right-handed alpha
Helix 53	AF8	F	91	109	Right-handed alpha
Helix 54	AF9	F	118	122	Right-handed 310
Helix 55	AG1	F	128	151	Right-handed alpha
Helix 56	AG2	F	171	176	Right-handed alpha
Helix 57	AG3	F	177	188	Right-handed alpha
Helix 58	AG4	F	195	208	Right-handed alpha

There are 6 sheets in PDB entry 4ZD6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	37	first strand
Strand 2	A	10	13	parallel
Strand 3	A	60	64	parallel
Strand 4	A	111	116	parallel
Strand 5	A	154	161	parallel
Strand 6	A	218	221	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	37	first strand
Strand 2	B	10	13	parallel
Strand 3	B	60	64	parallel
Strand 4	B	111	116	parallel
Strand 5	B	154	161	parallel
Strand 6	B	218	221	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	37	first strand
Strand 2	C	10	13	parallel
Strand 3	C	60	64	parallel
Strand 4	C	111	116	parallel
Strand 5	C	154	161	parallel
Strand 6	C	218	221	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	37	first strand
Strand 2	D	10	13	parallel
Strand 3	D	60	64	parallel
Strand 4	D	111	116	parallel
Strand 5	D	154	161	parallel
Strand 6	D	218	221	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	37	first strand
Strand 2	E	10	13	parallel
Strand 3	E	60	64	parallel
Strand 4	E	111	116	parallel
Strand 5	E	154	161	parallel
Strand 6	E	218	221	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	37	first strand
Strand 2	F	10	13	parallel
Strand 3	F	60	64	parallel
Strand 4	F	111	116	parallel
Strand 5	F	154	161	parallel
Strand 6	F	218	221	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4ZD6

Analysis of interatomic Contacts of Structural Units in PDB entry:
4ZD6