Analysis of interatomic Contacts of Structural Units in PDB entry:
4ZDI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4ZDI entry

There are 3 chains in PDB entry 4ZDI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 7	GLY 551
B	THR 7	LEU 553
C	THR 7	SER 314

There are197 helices in PDB entry 4ZDI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	38	Right-handed alpha
Helix 2	AA2	A	59	64	Right-handed alpha
Helix 3	AA3	A	77	87	Right-handed alpha
Helix 4	AA4	A	91	93	Right-handed 310
Helix 5	AA5	A	98	112	Right-handed alpha
Helix 6	AA6	A	123	135	Right-handed alpha
Helix 7	AA7	A	162	177	Right-handed alpha
Helix 8	AA8	A	200	213	Right-handed alpha
Helix 9	AA9	A	229	240	Right-handed alpha
Helix 10	AB1	A	243	245	Right-handed 310
Helix 11	AB2	A	258	266	Right-handed alpha
Helix 12	AB3	A	267	277	Right-handed alpha
Helix 13	AB4	A	285	297	Right-handed alpha
Helix 14	AB5	A	314	316	Right-handed 310
Helix 15	AB6	A	317	331	Right-handed alpha
Helix 16	AB7	A	343	346	Right-handed 310
Helix 17	AB8	A	347	355	Right-handed alpha
Helix 18	AB9	A	372	386	Right-handed alpha
Helix 19	AC1	A	393	408	Right-handed alpha
Helix 20	AC2	A	459	466	Right-handed alpha
Helix 21	AC3	A	484	489	Right-handed alpha
Helix 22	AC4	A	490	492	Right-handed 310
Helix 23	AC5	A	524	528	Right-handed 310
Helix 24	AC6	A	535	550	Right-handed alpha
Helix 25	AC7	B	23	38	Right-handed alpha
Helix 26	AC8	B	54	58	Right-handed 310
Helix 27	AC9	B	59	64	Right-handed alpha
Helix 28	AD1	B	77	87	Right-handed alpha
Helix 29	AD2	B	91	93	Right-handed 310
Helix 30	AD3	B	98	112	Right-handed alpha
Helix 31	AD4	B	123	135	Right-handed alpha
Helix 32	AD5	B	162	177	Right-handed alpha
Helix 33	AD6	B	200	213	Right-handed alpha
Helix 34	AD7	B	229	241	Right-handed alpha
Helix 35	AD8	B	243	245	Right-handed 310
Helix 36	AD9	B	258	266	Right-handed alpha
Helix 37	AE1	B	267	277	Right-handed alpha
Helix 38	AE2	B	285	297	Right-handed alpha
Helix 39	AE3	B	314	316	Right-handed 310
Helix 40	AE4	B	317	331	Right-handed alpha
Helix 41	AE5	B	343	346	Right-handed 310
Helix 42	AE6	B	347	355	Right-handed alpha
Helix 43	AE7	B	372	386	Right-handed alpha
Helix 44	AE8	B	393	408	Right-handed alpha
Helix 45	AE9	B	459	466	Right-handed alpha
Helix 46	AF1	B	484	489	Right-handed alpha
Helix 47	AF2	B	490	492	Right-handed 310
Helix 48	AF3	B	524	528	Right-handed 310
Helix 49	AF4	B	535	551	Right-handed alpha
Helix 50	AF5	C	23	38	Right-handed alpha
Helix 51	AF6	C	54	58	Right-handed 310
Helix 52	AF7	C	59	64	Right-handed alpha
Helix 53	AF8	C	77	87	Right-handed alpha
Helix 54	AF9	C	91	93	Right-handed 310
Helix 55	AG1	C	98	111	Right-handed alpha
Helix 56	AG2	C	123	135	Right-handed alpha
Helix 57	AG3	C	162	177	Right-handed alpha
Helix 58	AG4	C	200	213	Right-handed alpha
Helix 59	AG5	C	229	241	Right-handed alpha
Helix 60	AG6	C	243	245	Right-handed 310
Helix 61	AG7	C	258	266	Right-handed alpha
Helix 62	AG8	C	267	277	Right-handed alpha
Helix 63	AG9	C	285	297	Right-handed alpha
Helix 64	AH1	C	313	316	Right-handed 310
Helix 65	AH2	C	317	331	Right-handed alpha
Helix 66	AH3	C	343	346	Right-handed 310
Helix 67	AH4	C	347	355	Right-handed alpha
Helix 68	AH5	C	372	386	Right-handed alpha
Helix 69	AH6	C	393	408	Right-handed alpha
Helix 70	AH7	C	459	466	Right-handed alpha
Helix 71	AH8	C	484	489	Right-handed alpha
Helix 72	AH9	C	490	492	Right-handed 310
Helix 73	AI1	C	524	528	Right-handed 310
Helix 74	AI2	C	535	550	Right-handed alpha
Helix 75	AI3	D	23	38	Right-handed alpha
Helix 76	AI4	D	54	58	Right-handed 310
Helix 77	AI5	D	59	64	Right-handed alpha
Helix 78	AI6	D	77	87	Right-handed alpha
Helix 79	AI7	D	91	93	Right-handed 310
Helix 80	AI8	D	98	112	Right-handed alpha
Helix 81	AI9	D	123	135	Right-handed alpha
Helix 82	AJ1	D	162	177	Right-handed alpha
Helix 83	AJ2	D	200	213	Right-handed alpha
Helix 84	AJ3	D	229	240	Right-handed alpha
Helix 85	AJ4	D	243	245	Right-handed 310
Helix 86	AJ5	D	258	266	Right-handed alpha
Helix 87	AJ6	D	267	277	Right-handed alpha
Helix 88	AJ7	D	285	297	Right-handed alpha
Helix 89	AJ8	D	314	316	Right-handed 310
Helix 90	AJ9	D	317	331	Right-handed alpha
Helix 91	AK1	D	343	346	Right-handed 310
Helix 92	AK2	D	347	355	Right-handed alpha
Helix 93	AK3	D	372	386	Right-handed alpha
Helix 94	AK4	D	393	408	Right-handed alpha
Helix 95	AK5	D	459	466	Right-handed alpha
Helix 96	AK6	D	484	489	Right-handed alpha
Helix 97	AK7	D	490	492	Right-handed 310
Helix 98	AK8	D	524	528	Right-handed 310
Helix 99	AK9	D	535	550	Right-handed alpha
Helix 100	AL1	E	23	38	Right-handed alpha
Helix 101	AL2	E	54	58	Right-handed 310
Helix 102	AL3	E	59	64	Right-handed alpha
Helix 103	AL4	E	77	87	Right-handed alpha
Helix 104	AL5	E	91	93	Right-handed 310
Helix 105	AL6	E	98	112	Right-handed alpha
Helix 106	AL7	E	123	135	Right-handed alpha
Helix 107	AL8	E	136	138	Right-handed 310
Helix 108	AL9	E	162	177	Right-handed alpha
Helix 109	AM1	E	200	213	Right-handed alpha
Helix 110	AM2	E	229	240	Right-handed alpha
Helix 111	AM3	E	243	245	Right-handed 310
Helix 112	AM4	E	258	266	Right-handed alpha
Helix 113	AM5	E	267	277	Right-handed alpha
Helix 114	AM6	E	285	297	Right-handed alpha
Helix 115	AM7	E	314	316	Right-handed 310
Helix 116	AM8	E	317	331	Right-handed alpha
Helix 117	AM9	E	343	346	Right-handed 310
Helix 118	AN1	E	347	355	Right-handed alpha
Helix 119	AN2	E	372	386	Right-handed alpha
Helix 120	AN3	E	393	408	Right-handed alpha
Helix 121	AN4	E	459	466	Right-handed alpha
Helix 122	AN5	E	484	489	Right-handed alpha
Helix 123	AN6	E	490	492	Right-handed 310
Helix 124	AN7	E	524	528	Right-handed 310
Helix 125	AN8	E	535	550	Right-handed alpha
Helix 126	AN9	F	23	38	Right-handed alpha
Helix 127	AO1	F	54	58	Right-handed 310
Helix 128	AO2	F	59	64	Right-handed alpha
Helix 129	AO3	F	77	87	Right-handed alpha
Helix 130	AO4	F	91	93	Right-handed 310
Helix 131	AO5	F	98	112	Right-handed alpha
Helix 132	AO6	F	123	135	Right-handed alpha
Helix 133	AO7	F	162	177	Right-handed alpha
Helix 134	AO8	F	200	213	Right-handed alpha
Helix 135	AO9	F	229	240	Right-handed alpha
Helix 136	AP1	F	243	245	Right-handed 310
Helix 137	AP2	F	258	266	Right-handed alpha
Helix 138	AP3	F	267	277	Right-handed alpha
Helix 139	AP4	F	285	297	Right-handed alpha
Helix 140	AP5	F	313	316	Right-handed 310
Helix 141	AP6	F	317	331	Right-handed alpha
Helix 142	AP7	F	343	346	Right-handed 310
Helix 143	AP8	F	347	355	Right-handed alpha
Helix 144	AP9	F	372	386	Right-handed alpha
Helix 145	AQ1	F	393	408	Right-handed alpha
Helix 146	AQ2	F	459	466	Right-handed alpha
Helix 147	AQ3	F	484	489	Right-handed alpha
Helix 148	AQ4	F	490	492	Right-handed 310
Helix 149	AQ5	F	524	528	Right-handed 310
Helix 150	AQ6	F	535	550	Right-handed alpha
Helix 151	AQ7	G	23	38	Right-handed alpha
Helix 152	AQ8	G	59	64	Right-handed alpha
Helix 153	AQ9	G	77	87	Right-handed alpha
Helix 154	AR1	G	91	93	Right-handed 310
Helix 155	AR2	G	98	111	Right-handed alpha
Helix 156	AR3	G	123	135	Right-handed alpha
Helix 157	AR4	G	162	177	Right-handed alpha
Helix 158	AR5	G	200	213	Right-handed alpha
Helix 159	AR6	G	229	241	Right-handed alpha
Helix 160	AR7	G	243	245	Right-handed 310
Helix 161	AR8	G	258	266	Right-handed alpha
Helix 162	AR9	G	267	277	Right-handed alpha
Helix 163	AS1	G	285	297	Right-handed alpha
Helix 164	AS2	G	314	316	Right-handed 310
Helix 165	AS3	G	317	331	Right-handed alpha
Helix 166	AS4	G	343	346	Right-handed 310
Helix 167	AS5	G	347	355	Right-handed alpha
Helix 168	AS6	G	372	386	Right-handed alpha
Helix 169	AS7	G	393	408	Right-handed alpha
Helix 170	AS8	G	459	466	Right-handed alpha
Helix 171	AS9	G	484	489	Right-handed alpha
Helix 172	AT1	G	490	492	Right-handed 310
Helix 173	AT2	G	524	528	Right-handed 310
Helix 174	AT3	G	535	550	Right-handed alpha
Helix 175	AT4	H	24	38	Right-handed alpha
Helix 176	AT5	H	59	64	Right-handed alpha
Helix 177	AT6	H	77	87	Right-handed alpha
Helix 178	AT7	H	91	93	Right-handed 310
Helix 179	AT8	H	98	112	Right-handed alpha
Helix 180	AT9	H	123	135	Right-handed alpha
Helix 181	AU1	H	162	177	Right-handed alpha
Helix 182	AU2	H	200	213	Right-handed alpha
Helix 183	AU3	H	229	241	Right-handed alpha
Helix 184	AU4	H	243	245	Right-handed 310
Helix 185	AU5	H	258	266	Right-handed alpha
Helix 186	AU6	H	267	277	Right-handed alpha
Helix 187	AU7	H	285	297	Right-handed alpha
Helix 188	AU8	H	317	331	Right-handed alpha
Helix 189	AU9	H	343	346	Right-handed 310
Helix 190	AV1	H	347	355	Right-handed alpha
Helix 191	AV2	H	372	386	Right-handed alpha
Helix 192	AV3	H	393	408	Right-handed alpha
Helix 193	AV4	H	459	466	Right-handed alpha
Helix 194	AV5	H	484	489	Right-handed alpha
Helix 195	AV6	H	490	492	Right-handed 310
Helix 196	AV7	H	524	528	Right-handed 310
Helix 197	AV8	H	535	550	Right-handed alpha

There are 27 sheets in PDB entry 4ZDI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	97	first strand
Strand 2	A	42	48	parallel
Strand 3	A	148	156	parallel
Strand 4	A	10	16	parallel
Strand 5	A	181	188	parallel
Strand 6	A	219	224	parallel
Strand 7	A	247	251	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	68	first strand
Strand 2	A	74	75	anti-parallel

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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	341	first strand
Strand 2	A	300	308	parallel
Strand 3	A	360	363	parallel
Strand 4	A	389	392	parallel
Strand 5	A	518	521	parallel
Strand 6	A	505	509	anti-parallel
Strand 7	A	494	498	anti-parallel
Strand 8	A	445	455	anti-parallel
Strand 9	A	469	480	anti-parallel
Strand 10	A	423	429	anti-parallel
Strand 11	A	412	414	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	97	first strand
Strand 2	B	42	48	parallel
Strand 3	B	148	156	parallel
Strand 4	B	10	16	parallel
Strand 5	B	181	188	parallel
Strand 6	B	219	224	parallel
Strand 7	B	247	251	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	68	first strand
Strand 2	B	74	75	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	341	first strand
Strand 2	B	300	308	parallel
Strand 3	B	360	363	parallel
Strand 4	B	389	392	parallel
Strand 5	B	518	521	parallel
Strand 6	B	505	509	anti-parallel
Strand 7	B	494	498	anti-parallel
Strand 8	B	447	455	anti-parallel
Strand 9	B	469	476	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	412	414	first strand
Strand 2	B	423	428	parallel
Strand 3	B	478	480	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	97	first strand
Strand 2	C	42	48	parallel
Strand 3	C	148	156	parallel
Strand 4	C	10	16	parallel
Strand 5	C	181	188	parallel
Strand 6	C	219	224	parallel
Strand 7	C	247	251	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	68	first strand
Strand 2	C	74	75	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	333	341	first strand
Strand 2	C	300	308	parallel
Strand 3	C	360	363	parallel
Strand 4	C	389	392	parallel
Strand 5	C	518	521	parallel
Strand 6	C	505	509	anti-parallel
Strand 7	C	494	498	anti-parallel
Strand 8	C	447	455	anti-parallel
Strand 9	C	469	476	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	412	414	first strand
Strand 2	C	423	427	parallel
Strand 3	C	479	480	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	97	first strand
Strand 2	D	42	48	parallel
Strand 3	D	148	156	parallel
Strand 4	D	10	16	parallel
Strand 5	D	181	188	parallel
Strand 6	D	219	224	parallel
Strand 7	D	247	251	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	68	first strand
Strand 2	D	74	75	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	191	192	first strand
Strand 2	D	197	198	anti-parallel

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There are 11 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	333	341	first strand
Strand 2	D	300	308	parallel
Strand 3	D	360	363	parallel
Strand 4	D	389	392	parallel
Strand 5	D	518	521	parallel
Strand 6	D	505	509	anti-parallel
Strand 7	D	494	498	anti-parallel
Strand 8	D	446	455	anti-parallel
Strand 9	D	469	480	anti-parallel
Strand 10	D	423	429	anti-parallel
Strand 11	D	412	414	parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	95	97	first strand
Strand 2	E	42	48	parallel
Strand 3	E	148	156	parallel
Strand 4	E	10	16	parallel
Strand 5	E	181	188	parallel
Strand 6	E	219	224	parallel
Strand 7	E	247	251	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	67	68	first strand
Strand 2	E	74	75	anti-parallel

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There are 11 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	333	341	first strand
Strand 2	E	300	308	parallel
Strand 3	E	360	363	parallel
Strand 4	E	389	392	parallel
Strand 5	E	518	521	parallel
Strand 6	E	505	509	anti-parallel
Strand 7	E	494	498	anti-parallel
Strand 8	E	446	455	anti-parallel
Strand 9	E	469	480	anti-parallel
Strand 10	E	423	429	anti-parallel
Strand 11	E	412	414	parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	95	97	first strand
Strand 2	F	42	48	parallel
Strand 3	F	148	153	parallel
Strand 4	F	10	15	parallel
Strand 5	F	181	188	parallel
Strand 6	F	219	224	parallel
Strand 7	F	247	251	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	67	68	first strand
Strand 2	F	74	75	anti-parallel

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There are 11 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	333	341	first strand
Strand 2	F	300	308	parallel
Strand 3	F	360	363	parallel
Strand 4	F	389	392	parallel
Strand 5	F	518	521	parallel
Strand 6	F	505	509	anti-parallel
Strand 7	F	494	498	anti-parallel
Strand 8	F	446	455	anti-parallel
Strand 9	F	469	480	anti-parallel
Strand 10	F	423	429	anti-parallel
Strand 11	F	412	414	parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	95	97	first strand
Strand 2	G	42	48	parallel
Strand 3	G	148	156	parallel
Strand 4	G	10	16	parallel
Strand 5	G	181	188	parallel
Strand 6	G	219	224	parallel
Strand 7	G	247	251	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	67	68	first strand
Strand 2	G	74	75	anti-parallel

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There are 11 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	333	341	first strand
Strand 2	G	300	308	parallel
Strand 3	G	360	363	parallel
Strand 4	G	389	392	parallel
Strand 5	G	518	521	parallel
Strand 6	G	505	509	anti-parallel
Strand 7	G	494	498	anti-parallel
Strand 8	G	446	455	anti-parallel
Strand 9	G	469	480	anti-parallel
Strand 10	G	424	429	anti-parallel
Strand 11	G	413	414	parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	95	97	first strand
Strand 2	H	42	48	parallel
Strand 3	H	148	156	parallel
Strand 4	H	10	16	parallel
Strand 5	H	181	188	parallel
Strand 6	H	219	224	parallel
Strand 7	H	247	251	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	67	68	first strand
Strand 2	H	74	75	anti-parallel

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There are 11 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	333	341	first strand
Strand 2	H	300	308	parallel
Strand 3	H	360	363	parallel
Strand 4	H	389	392	parallel
Strand 5	H	518	521	parallel
Strand 6	H	505	509	anti-parallel
Strand 7	H	494	498	anti-parallel
Strand 8	H	446	455	anti-parallel
Strand 9	H	469	480	anti-parallel
Strand 10	H	423	429	anti-parallel
Strand 11	H	412	414	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4ZDI

Analysis of interatomic Contacts of Structural Units in PDB entry:
4ZDI