Analysis of interatomic Contacts of Structural Units in PDB entry:
4ZDJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4ZDJ entry

There is 1 chain in PDB entry 4ZDJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 5GLU 552
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 4ZDJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 38Right-handed alpha
Helix 2
AA2
A
54 58Right-handed 310
Helix 3
AA3
A
59 64Right-handed alpha
Helix 4
AA4
A
77 87Right-handed alpha
Helix 5
AA5
A
91 93Right-handed 310
Helix 6
AA6
A
98 111Right-handed alpha
Helix 7
AA7
A
120 136Right-handed alpha
Helix 8
AA8
A
162 177Right-handed alpha
Helix 9
AA9
A
200 213Right-handed alpha
Helix 10
AB1
A
229 241Right-handed alpha
Helix 11
AB2
A
243 245Right-handed 310
Helix 12
AB3
A
255 257Right-handed 310
Helix 13
AB4
A
258 266Right-handed alpha
Helix 14
AB5
A
267 276Right-handed alpha
Helix 15
AB6
A
285 297Right-handed alpha
Helix 16
AB7
A
313 316Right-handed 310
Helix 17
AB8
A
317 331Right-handed alpha
Helix 18
AB9
A
343 346Right-handed 310
Helix 19
AC1
A
347 356Right-handed alpha
Helix 20
AC2
A
372 386Right-handed alpha
Helix 21
AC3
A
393 407Right-handed alpha
Helix 22
AC4
A
459 466Right-handed alpha
Helix 23
AC5
A
484 489Right-handed alpha
Helix 24
AC6
A
490 492Right-handed 310
Helix 25
AC7
A
524 529Right-handed 310
Helix 26
AC8
A
535 552Right-handed alpha
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There are 5 sheets in PDB entry 4ZDJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 97first strand
Strand 2
A
42 48parallel
Strand 3
A
148 153parallel
Strand 4
A
10 16parallel
Strand 5
A
181 188parallel
Strand 6
A
219 224parallel
Strand 7
A
247 251parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 68first strand
Strand 2
A
74 75anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 192first strand
Strand 2
A
197 198anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 341first strand
Strand 2
A
300 308parallel
Strand 3
A
360 363parallel
Strand 4
A
389 392parallel
Strand 5
A
518 521parallel
Strand 6
A
505 509anti-parallel
Strand 7
A
494 498anti-parallel
Strand 8
A
447 455anti-parallel
Strand 9
A
469 476anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
413 414first strand
Strand 2
A
424 428parallel
Strand 3
A
478 480anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il