Analysis of interatomic Contacts of Structural Units in PDB entry:
4ZDM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4ZDM entry

There is 1 chain in PDB entry 4ZDM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LYS 255
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 4ZDM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 37Right-handed 310
Helix 2
AA2
A
39 53Right-handed alpha
Helix 3
AA3
A
77 85Right-handed alpha
Helix 4
AA4
A
98 103Right-handed alpha
Helix 5
AA5
A
129 136Right-handed 310
Helix 6
AA6
A
147 156Right-handed alpha
Helix 7
AA7
A
158 168Right-handed alpha
Helix 8
AA8
A
173 183Right-handed alpha
Helix 9
AA9
A
193 199Right-handed alpha
Helix 10
AB1
A
227 241Right-handed alpha
Helix 11
AB2
A
242 255Right-handed alpha
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There are 2 sheets in PDB entry 4ZDM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 59first strand
Strand 2
A
8 13parallel
Strand 3
A
90 96parallel
Strand 4
A
212 221anti-parallel
Strand 5
A
112 121anti-parallel
Strand 6
A
186 192anti-parallel
Strand 7
A
140 144parallel
Strand 8
A
169 171parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
212 221anti-parallel
Strand 3
A
112 121anti-parallel
Strand 4
A
205 207anti-parallel
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