Analysis of interatomic Contacts of Structural Units in PDB entry:
4ZDP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4ZDP entry

There are 5 chains in PDB entry 4ZDP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 20	LYS 463
B	GLY 21	LYS 463
C	GLY 21	LYS 463
D	GLY 21	LYS 463
E	G 1	G 73

There are 60 helices in PDB entry 4ZDP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	39	Right-handed alpha
Helix 2	AA2	A	47	60	Right-handed alpha
Helix 3	AA3	A	61	66	Right-handed 310
Helix 4	AA4	A	81	88	Right-handed alpha
Helix 5	AA5	A	108	130	Right-handed alpha
Helix 6	AA6	A	143	159	Right-handed alpha
Helix 7	AA7	A	172	182	Right-handed alpha
Helix 8	AA8	A	201	213	Right-handed alpha
Helix 9	AA9	A	234	245	Right-handed alpha
Helix 10	AB1	A	259	273	Right-handed alpha
Helix 11	AB2	A	282	287	Right-handed alpha
Helix 12	AB3	A	299	308	Right-handed alpha
Helix 13	AB4	A	316	358	Right-handed alpha
Helix 14	AB5	A	386	398	Right-handed alpha
Helix 15	AB6	A	443	462	Right-handed alpha
Helix 16	AB7	B	24	39	Right-handed alpha
Helix 17	AB8	B	47	60	Right-handed alpha
Helix 18	AB9	B	61	66	Right-handed 310
Helix 19	AC1	B	81	88	Right-handed alpha
Helix 20	AC2	B	108	130	Right-handed alpha
Helix 21	AC3	B	143	159	Right-handed alpha
Helix 22	AC4	B	172	182	Right-handed alpha
Helix 23	AC5	B	201	213	Right-handed alpha
Helix 24	AC6	B	234	246	Right-handed alpha
Helix 25	AC7	B	259	273	Right-handed alpha
Helix 26	AC8	B	282	287	Right-handed alpha
Helix 27	AC9	B	299	308	Right-handed alpha
Helix 28	AD1	B	316	358	Right-handed alpha
Helix 29	AD2	B	386	398	Right-handed alpha
Helix 30	AD3	B	443	462	Right-handed alpha
Helix 31	AD4	C	24	39	Right-handed alpha
Helix 32	AD5	C	47	60	Right-handed alpha
Helix 33	AD6	C	61	66	Right-handed 310
Helix 34	AD7	C	81	88	Right-handed alpha
Helix 35	AD8	C	108	130	Right-handed alpha
Helix 36	AD9	C	143	159	Right-handed alpha
Helix 37	AE1	C	172	182	Right-handed alpha
Helix 38	AE2	C	201	213	Right-handed alpha
Helix 39	AE3	C	234	245	Right-handed alpha
Helix 40	AE4	C	259	273	Right-handed alpha
Helix 41	AE5	C	282	287	Right-handed alpha
Helix 42	AE6	C	299	308	Right-handed alpha
Helix 43	AE7	C	316	359	Right-handed alpha
Helix 44	AE8	C	386	398	Right-handed alpha
Helix 45	AE9	C	443	462	Right-handed alpha
Helix 46	AF1	D	24	39	Right-handed alpha
Helix 47	AF2	D	47	60	Right-handed alpha
Helix 48	AF3	D	61	66	Right-handed 310
Helix 49	AF4	D	81	88	Right-handed alpha
Helix 50	AF5	D	108	130	Right-handed alpha
Helix 51	AF6	D	143	159	Right-handed alpha
Helix 52	AF7	D	172	182	Right-handed alpha
Helix 53	AF8	D	201	213	Right-handed alpha
Helix 54	AF9	D	234	246	Right-handed alpha
Helix 55	AG1	D	259	273	Right-handed alpha
Helix 56	AG2	D	282	287	Right-handed alpha
Helix 57	AG3	D	299	309	Right-handed alpha
Helix 58	AG4	D	316	358	Right-handed alpha
Helix 59	AG5	D	386	398	Right-handed alpha
Helix 60	AG6	D	443	460	Right-handed alpha

There are 16 sheets in PDB entry 4ZDP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	140	first strand
Strand 2	A	293	297	anti-parallel
Strand 3	A	277	281	anti-parallel
Strand 4	A	249	252	parallel
Strand 5	A	217	223	parallel
Strand 6	A	164	168	parallel
Strand 7	A	185	189	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	194	first strand
Strand 2	A	197	199	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	376	first strand
Strand 2	A	433	437	anti-parallel
Strand 3	A	405	406	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	412	414	first strand
Strand 2	A	417	419	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	136	140	first strand
Strand 2	B	293	297	anti-parallel
Strand 3	B	277	281	anti-parallel
Strand 4	B	249	252	parallel
Strand 5	B	217	223	parallel
Strand 6	B	164	168	parallel
Strand 7	B	185	189	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	194	first strand
Strand 2	B	197	199	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	376	first strand
Strand 2	B	433	437	anti-parallel
Strand 3	B	405	406	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	412	414	first strand
Strand 2	B	417	419	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	140	first strand
Strand 2	C	293	297	anti-parallel
Strand 3	C	277	281	anti-parallel
Strand 4	C	249	252	parallel
Strand 5	C	217	223	parallel
Strand 6	C	164	168	parallel
Strand 7	C	185	189	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	194	first strand
Strand 2	C	197	199	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	372	376	first strand
Strand 2	C	433	437	anti-parallel
Strand 3	C	405	406	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	412	414	first strand
Strand 2	C	417	419	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	136	140	first strand
Strand 2	D	293	297	anti-parallel
Strand 3	D	277	281	anti-parallel
Strand 4	D	249	252	parallel
Strand 5	D	217	223	parallel
Strand 6	D	164	168	parallel
Strand 7	D	185	189	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	194	first strand
Strand 2	D	197	199	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	372	376	first strand
Strand 2	D	433	437	anti-parallel
Strand 3	D	405	406	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	412	414	first strand
Strand 2	D	417	419	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4ZDP

Analysis of interatomic Contacts of Structural Units in PDB entry:
4ZDP