Analysis of interatomic Contacts of Structural Units in PDB entry:
4ZFJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4ZFJ entry

There are 3 chains in PDB entry 4ZFJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 2	HIS 230
B	CYS 2	SER 229
C	CYS 2	VAL 215

There are 96 helices in PDB entry 4ZFJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	19	Right-handed alpha
Helix 2	AA2	A	24	29	Right-handed alpha
Helix 3	AA3	A	64	67	Right-handed 310
Helix 4	AA4	A	68	75	Right-handed alpha
Helix 5	AA5	A	97	101	Right-handed 310
Helix 6	AA6	A	118	122	Right-handed 310
Helix 7	AA7	A	132	145	Right-handed alpha
Helix 8	AA8	A	148	160	Right-handed alpha
Helix 9	AA9	B	14	19	Right-handed alpha
Helix 10	AB1	B	24	29	Right-handed alpha
Helix 11	AB2	B	64	67	Right-handed 310
Helix 12	AB3	B	68	75	Right-handed alpha
Helix 13	AB4	B	97	101	Right-handed 310
Helix 14	AB5	B	118	122	Right-handed 310
Helix 15	AB6	B	132	145	Right-handed alpha
Helix 16	AB7	B	148	160	Right-handed alpha
Helix 17	AB8	C	14	19	Right-handed alpha
Helix 18	AB9	C	24	31	Right-handed alpha
Helix 19	AC1	C	64	67	Right-handed 310
Helix 20	AC2	C	68	75	Right-handed alpha
Helix 21	AC3	C	97	101	Right-handed 310
Helix 22	AC4	C	118	122	Right-handed 310
Helix 23	AC5	C	132	145	Right-handed alpha
Helix 24	AC6	C	148	160	Right-handed alpha
Helix 25	AC7	D	14	19	Right-handed alpha
Helix 26	AC8	D	24	31	Right-handed alpha
Helix 27	AC9	D	64	67	Right-handed 310
Helix 28	AD1	D	68	75	Right-handed alpha
Helix 29	AD2	D	97	101	Right-handed 310
Helix 30	AD3	D	118	122	Right-handed 310
Helix 31	AD4	D	132	145	Right-handed alpha
Helix 32	AD5	D	148	160	Right-handed alpha
Helix 33	AD6	E	14	19	Right-handed alpha
Helix 34	AD7	E	24	29	Right-handed alpha
Helix 35	AD8	E	64	67	Right-handed 310
Helix 36	AD9	E	68	75	Right-handed alpha
Helix 37	AE1	E	97	101	Right-handed 310
Helix 38	AE2	E	118	122	Right-handed 310
Helix 39	AE3	E	132	145	Right-handed alpha
Helix 40	AE4	E	148	160	Right-handed alpha
Helix 41	AE5	F	14	19	Right-handed alpha
Helix 42	AE6	F	24	29	Right-handed alpha
Helix 43	AE7	F	64	67	Right-handed 310
Helix 44	AE8	F	68	75	Right-handed alpha
Helix 45	AE9	F	97	101	Right-handed 310
Helix 46	AF1	F	118	122	Right-handed 310
Helix 47	AF2	F	132	145	Right-handed alpha
Helix 48	AF3	F	148	160	Right-handed alpha
Helix 49	AF4	G	14	19	Right-handed alpha
Helix 50	AF5	G	24	29	Right-handed alpha
Helix 51	AF6	G	64	67	Right-handed 310
Helix 52	AF7	G	68	75	Right-handed alpha
Helix 53	AF8	G	97	101	Right-handed 310
Helix 54	AF9	G	118	122	Right-handed 310
Helix 55	AG1	G	132	145	Right-handed alpha
Helix 56	AG2	G	148	160	Right-handed alpha
Helix 57	AG3	H	14	19	Right-handed alpha
Helix 58	AG4	H	24	29	Right-handed alpha
Helix 59	AG5	H	64	67	Right-handed 310
Helix 60	AG6	H	68	75	Right-handed alpha
Helix 61	AG7	H	97	101	Right-handed 310
Helix 62	AG8	H	118	122	Right-handed 310
Helix 63	AG9	H	132	145	Right-handed alpha
Helix 64	AH1	H	148	160	Right-handed alpha
Helix 65	AH2	I	14	19	Right-handed alpha
Helix 66	AH3	I	24	29	Right-handed alpha
Helix 67	AH4	I	64	67	Right-handed 310
Helix 68	AH5	I	68	75	Right-handed alpha
Helix 69	AH6	I	97	101	Right-handed 310
Helix 70	AH7	I	118	122	Right-handed 310
Helix 71	AH8	I	132	145	Right-handed alpha
Helix 72	AH9	I	148	160	Right-handed alpha
Helix 73	AI1	J	14	19	Right-handed alpha
Helix 74	AI2	J	24	29	Right-handed alpha
Helix 75	AI3	J	64	67	Right-handed 310
Helix 76	AI4	J	68	75	Right-handed alpha
Helix 77	AI5	J	97	101	Right-handed 310
Helix 78	AI6	J	118	122	Right-handed 310
Helix 79	AI7	J	132	145	Right-handed alpha
Helix 80	AI8	J	148	160	Right-handed alpha
Helix 81	AI9	K	14	19	Right-handed alpha
Helix 82	AJ1	K	24	29	Right-handed alpha
Helix 83	AJ2	K	64	67	Right-handed 310
Helix 84	AJ3	K	68	75	Right-handed alpha
Helix 85	AJ4	K	97	101	Right-handed 310
Helix 86	AJ5	K	118	122	Right-handed 310
Helix 87	AJ6	K	132	145	Right-handed alpha
Helix 88	AJ7	K	148	160	Right-handed alpha
Helix 89	AJ8	L	14	19	Right-handed alpha
Helix 90	AJ9	L	24	29	Right-handed alpha
Helix 91	AK1	L	64	67	Right-handed 310
Helix 92	AK2	L	68	75	Right-handed alpha
Helix 93	AK3	L	97	101	Right-handed 310
Helix 94	AK4	L	118	122	Right-handed 310
Helix 95	AK5	L	132	145	Right-handed alpha
Helix 96	AK6	L	148	160	Right-handed alpha

There are 24 sheets in PDB entry 4ZFJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	61	first strand
Strand 2	A	45	50	anti-parallel
Strand 3	A	79	87	anti-parallel
Strand 4	A	3	13	anti-parallel
Strand 5	A	192	196	anti-parallel
Strand 6	A	185	189	anti-parallel
Strand 7	A	207	208	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	105	first strand
Strand 2	A	110	116	anti-parallel
Strand 3	A	164	170	anti-parallel
Strand 4	A	174	179	anti-parallel
Strand 5	A	213	218	anti-parallel
Strand 6	A	221	226	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	61	first strand
Strand 2	B	45	50	anti-parallel
Strand 3	B	79	87	anti-parallel
Strand 4	B	3	13	anti-parallel
Strand 5	B	192	196	anti-parallel
Strand 6	B	185	189	anti-parallel
Strand 7	B	207	208	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	105	first strand
Strand 2	B	110	116	anti-parallel
Strand 3	B	164	170	anti-parallel
Strand 4	B	175	179	anti-parallel
Strand 5	B	213	217	anti-parallel
Strand 6	B	222	226	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	61	first strand
Strand 2	C	45	50	anti-parallel
Strand 3	C	79	87	anti-parallel
Strand 4	C	3	13	anti-parallel
Strand 5	C	192	196	anti-parallel
Strand 6	C	184	189	anti-parallel
Strand 7	C	207	209	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	105	first strand
Strand 2	C	110	116	anti-parallel
Strand 3	C	164	170	anti-parallel
Strand 4	C	174	179	anti-parallel
Strand 5	C	213	218	anti-parallel
Strand 6	C	221	226	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	61	first strand
Strand 2	D	45	50	anti-parallel
Strand 3	D	79	87	anti-parallel
Strand 4	D	3	13	anti-parallel
Strand 5	D	192	196	anti-parallel
Strand 6	D	184	189	anti-parallel
Strand 7	D	207	209	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	105	first strand
Strand 2	D	110	116	anti-parallel
Strand 3	D	164	170	anti-parallel
Strand 4	D	175	179	anti-parallel
Strand 5	D	213	218	anti-parallel
Strand 6	D	221	226	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	61	first strand
Strand 2	E	45	50	anti-parallel
Strand 3	E	79	87	anti-parallel
Strand 4	E	3	13	anti-parallel
Strand 5	E	192	196	anti-parallel
Strand 6	E	185	189	anti-parallel
Strand 7	E	207	208	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	104	105	first strand
Strand 2	E	110	116	anti-parallel
Strand 3	E	164	170	anti-parallel
Strand 4	E	174	179	anti-parallel
Strand 5	E	213	218	anti-parallel
Strand 6	E	221	226	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	56	61	first strand
Strand 2	F	45	50	anti-parallel
Strand 3	F	79	87	anti-parallel
Strand 4	F	3	13	anti-parallel
Strand 5	F	192	196	anti-parallel
Strand 6	F	185	189	anti-parallel
Strand 7	F	207	208	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	104	105	first strand
Strand 2	F	110	116	anti-parallel
Strand 3	F	164	170	anti-parallel
Strand 4	F	175	178	anti-parallel
Strand 5	F	213	218	anti-parallel
Strand 6	F	221	226	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	56	61	first strand
Strand 2	G	45	50	anti-parallel
Strand 3	G	79	87	anti-parallel
Strand 4	G	3	13	anti-parallel
Strand 5	G	192	196	anti-parallel
Strand 6	G	184	189	anti-parallel
Strand 7	G	207	209	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	104	105	first strand
Strand 2	G	110	116	anti-parallel
Strand 3	G	164	170	anti-parallel
Strand 4	G	174	179	anti-parallel
Strand 5	G	213	218	anti-parallel
Strand 6	G	221	226	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	56	61	first strand
Strand 2	H	45	50	anti-parallel
Strand 3	H	79	87	anti-parallel
Strand 4	H	3	13	anti-parallel
Strand 5	H	192	196	anti-parallel
Strand 6	H	185	189	anti-parallel
Strand 7	H	207	208	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	104	105	first strand
Strand 2	H	110	116	anti-parallel
Strand 3	H	164	170	anti-parallel
Strand 4	H	175	179	anti-parallel
Strand 5	H	213	218	anti-parallel
Strand 6	H	221	226	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	56	61	first strand
Strand 2	I	45	50	anti-parallel
Strand 3	I	79	87	anti-parallel
Strand 4	I	3	13	anti-parallel
Strand 5	I	192	196	anti-parallel
Strand 6	I	184	189	anti-parallel
Strand 7	I	207	209	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	104	105	first strand
Strand 2	I	110	116	anti-parallel
Strand 3	I	164	170	anti-parallel
Strand 4	I	174	179	anti-parallel
Strand 5	I	213	218	anti-parallel
Strand 6	I	221	226	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	56	61	first strand
Strand 2	J	45	50	anti-parallel
Strand 3	J	79	87	anti-parallel
Strand 4	J	3	13	anti-parallel
Strand 5	J	192	196	anti-parallel
Strand 6	J	185	189	anti-parallel
Strand 7	J	207	208	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	104	105	first strand
Strand 2	J	110	116	anti-parallel
Strand 3	J	164	170	anti-parallel
Strand 4	J	174	179	anti-parallel
Strand 5	J	213	218	anti-parallel
Strand 6	J	221	226	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	56	61	first strand
Strand 2	K	45	50	anti-parallel
Strand 3	K	79	87	anti-parallel
Strand 4	K	3	13	anti-parallel
Strand 5	K	192	196	anti-parallel
Strand 6	K	184	189	anti-parallel
Strand 7	K	207	209	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	104	105	first strand
Strand 2	K	110	116	anti-parallel
Strand 3	K	164	170	anti-parallel
Strand 4	K	174	179	anti-parallel
Strand 5	K	213	218	anti-parallel
Strand 6	K	221	226	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	56	61	first strand
Strand 2	L	45	50	anti-parallel
Strand 3	L	79	87	anti-parallel
Strand 4	L	3	13	anti-parallel
Strand 5	L	192	196	anti-parallel
Strand 6	L	185	189	anti-parallel
Strand 7	L	207	208	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	104	105	first strand
Strand 2	L	110	116	anti-parallel
Strand 3	L	164	170	anti-parallel
Strand 4	L	174	179	anti-parallel
Strand 5	L	213	218	anti-parallel
Strand 6	L	221	226	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4ZFJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
4ZFJ