Analysis of interatomic Contacts of Structural Units in PDB entry:
4ZGV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4ZGV entry

There are 2 chains in PDB entry 4ZGV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 59	TRP 867
B	SER 59	ASN 506

There are 20 helices in PDB entry 4ZGV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	61	66	Right-handed alpha
Helix 2	AA2	A	73	77	Right-handed alpha
Helix 3	AA3	A	86	93	Right-handed 310
Helix 4	AA4	A	142	147	Right-handed 310
Helix 5	AA5	A	231	238	Right-handed alpha
Helix 6	AA6	A	468	472	Right-handed 310
Helix 7	AA7	A	572	577	Right-handed alpha
Helix 8	AA8	A	727	729	Right-handed 310
Helix 9	AA9	A	749	751	Right-handed 310
Helix 10	AB1	A	783	787	Right-handed 310
Helix 11	AB2	B	61	66	Right-handed alpha
Helix 12	AB3	B	73	78	Right-handed alpha
Helix 13	AB4	B	86	93	Right-handed 310
Helix 14	AB5	B	142	147	Right-handed 310
Helix 15	AB6	B	231	238	Right-handed alpha
Helix 16	AB7	B	468	472	Right-handed 310
Helix 17	AB8	B	572	577	Right-handed alpha
Helix 18	AB9	B	727	729	Right-handed 310
Helix 19	AC1	B	749	751	Right-handed 310
Helix 20	AC2	B	783	787	Right-handed 310

There are 23 sheets in PDB entry 4ZGV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	72	first strand
Strand 2	A	175	181	anti-parallel
Strand 3	A	196	201	anti-parallel
Strand 4	A	127	130	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	98	first strand
Strand 2	A	116	118	anti-parallel

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There are 23 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	256	first strand
Strand 2	A	211	219	anti-parallel
Strand 3	A	859	867	anti-parallel
Strand 4	A	823	830	anti-parallel
Strand 5	A	805	817	anti-parallel
Strand 6	A	753	762	anti-parallel
Strand 7	A	738	748	anti-parallel
Strand 8	A	687	701	anti-parallel
Strand 9	A	666	677	anti-parallel
Strand 10	A	630	642	anti-parallel
Strand 11	A	615	626	anti-parallel
Strand 12	A	557	567	anti-parallel
Strand 13	A	544	550	anti-parallel
Strand 14	A	522	533	anti-parallel
Strand 15	A	500	518	anti-parallel
Strand 16	A	436	454	anti-parallel
Strand 17	A	412	427	anti-parallel
Strand 18	A	354	365	anti-parallel
Strand 19	A	340	348	anti-parallel
Strand 20	A	310	317	anti-parallel
Strand 21	A	286	304	anti-parallel
Strand 22	A	264	281	anti-parallel
Strand 23	A	248	259	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	294	first strand
Strand 2	A	320	325	anti-parallel
Strand 3	A	333	338	anti-parallel
Strand 4	A	365	371	anti-parallel
Strand 5	A	411	416	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	315	317	first strand
Strand 2	A	341	343	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	458	461	first strand
Strand 2	A	493	497	anti-parallel
Strand 3	A	583	587	anti-parallel
Strand 4	A	599	601	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	527	533	first strand
Strand 2	A	538	544	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	646	652	first strand
Strand 2	A	655	661	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	766	770	first strand
Strand 2	A	797	801	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	775	777	first strand
Strand 2	A	792	794	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	382	first strand
Strand 2	A	402	407	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	839	843	first strand
Strand 2	A	850	853	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	72	first strand
Strand 2	B	175	181	anti-parallel
Strand 3	B	196	201	anti-parallel
Strand 4	B	127	130	parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	B	116	118	anti-parallel

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There are 23 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	256	first strand
Strand 2	B	211	219	anti-parallel
Strand 3	B	859	867	anti-parallel
Strand 4	B	823	830	anti-parallel
Strand 5	B	805	817	anti-parallel
Strand 6	B	753	762	anti-parallel
Strand 7	B	738	748	anti-parallel
Strand 8	B	687	701	anti-parallel
Strand 9	B	666	677	anti-parallel
Strand 10	B	630	642	anti-parallel
Strand 11	B	615	626	anti-parallel
Strand 12	B	557	567	anti-parallel
Strand 13	B	544	551	anti-parallel
Strand 14	B	522	532	anti-parallel
Strand 15	B	500	518	anti-parallel
Strand 16	B	436	454	anti-parallel
Strand 17	B	412	427	anti-parallel
Strand 18	B	354	365	anti-parallel
Strand 19	B	340	348	anti-parallel
Strand 20	B	310	317	anti-parallel
Strand 21	B	286	304	anti-parallel
Strand 22	B	264	281	anti-parallel
Strand 23	B	247	259	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	294	first strand
Strand 2	B	320	325	anti-parallel
Strand 3	B	333	337	anti-parallel
Strand 4	B	365	371	anti-parallel
Strand 5	B	411	416	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	317	first strand
Strand 2	B	341	343	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	458	460	first strand
Strand 2	B	493	497	anti-parallel
Strand 3	B	582	587	anti-parallel
Strand 4	B	599	602	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	527	533	first strand
Strand 2	B	538	544	anti-parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	605	607	first strand
Strand 2	B	655	661	parallel
Strand 3	B	646	652	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	766	770	first strand
Strand 2	B	797	801	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	376	382	first strand
Strand 2	B	402	407	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	839	843	first strand
Strand 2	B	850	853	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4ZGV

Analysis of interatomic Contacts of Structural Units in PDB entry:
4ZGV