Analysis of interatomic Contacts of Structural Units in PDB entry:
4ZIM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4ZIM entry

There are 4 chains in PDB entry 4ZIM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 842GLU 1006
A
 LYS 1009ALA 1131
B
 HIS 837GLU 1006
B
 LYS 1009GLY 1132
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 4ZIM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
845 847Right-handed 310
Helix 2
AA2
A
888 904Right-handed alpha
Helix 3
AA3
A
936 944Right-handed alpha
Helix 4
AA4
A
945 948Right-handed 310
Helix 5
AA5
A
949 970Right-handed alpha
Helix 6
AA6
A
978 980Right-handed 310
Helix 7
AA7
A
1022 1029Right-handed alpha
Helix 8
AA8
A
1032 1049Right-handed alpha
Helix 9
AA9
A
1052 1055Right-handed 310
Helix 10
AB1
A
1056 1066Right-handed alpha
Helix 11
AB2
A
1072 1084Right-handed alpha
Helix 12
AB3
A
1095 1106Right-handed alpha
Helix 13
AB4
A
1109 1113Right-handed 310
Helix 14
AB5
A
1115 1131Right-handed alpha
Helix 15
AB6
B
845 847Right-handed 310
Helix 16
AB7
B
888 904Right-handed alpha
Helix 17
AB8
B
936 944Right-handed alpha
Helix 18
AB9
B
945 948Right-handed 310
Helix 19
AC1
B
949 970Right-handed alpha
Helix 20
AC2
B
978 980Right-handed 310
Helix 21
AC3
B
1017 1021Right-handed 310
Helix 22
AC4
B
1022 1029Right-handed alpha
Helix 23
AC5
B
1032 1049Right-handed alpha
Helix 24
AC6
B
1052 1055Right-handed 310
Helix 25
AC7
B
1056 1066Right-handed alpha
Helix 26
AC8
B
1071 1084Right-handed alpha
Helix 27
AC9
B
1095 1106Right-handed alpha
Helix 28
AD1
B
1109 1113Right-handed 310
Helix 29
AD2
B
1115 1132Right-handed alpha
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There are 8 sheets in PDB entry 4ZIM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
849 857first strand
Strand 2
A
862 868anti-parallel
Strand 3
A
877 883anti-parallel
Strand 4
A
926 930anti-parallel
Strand 5
A
913 917anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
972 973first strand
Strand 2
A
999 1000anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
982 986first strand
Strand 2
A
989 992anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1008 1009first strand
Strand 2
A
1030 1031anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
843 844first strand
Strand 2
B
913 917parallel
Strand 3
B
926 930anti-parallel
Strand 4
B
877 884anti-parallel
Strand 5
B
861 868anti-parallel
Strand 6
B
849 857anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
972 973first strand
Strand 2
B
999 1000anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
982 984first strand
Strand 2
B
990 992anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1008 1009first strand
Strand 2
B
1030 1031anti-parallel
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