Analysis of interatomic Contacts of Structural Units in PDB entry:
4ZJF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4ZJF entry

There are 4 chains in PDB entry 4ZJF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 77SER 237
B
 THR 81SER 237
C
 THR 77SER 237
D
 THR 81SER 237
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 4ZJF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
122 140Right-handed alpha
Helix 2
AA2
A
172 179Right-handed alpha
Helix 3
AA3
A
182 195Right-handed alpha
Helix 4
AA4
B
122 140Right-handed alpha
Helix 5
AA5
B
172 179Right-handed alpha
Helix 6
AA6
B
182 195Right-handed alpha
Helix 7
AA7
C
122 140Right-handed alpha
Helix 8
AA8
C
172 179Right-handed alpha
Helix 9
AA9
C
182 195Right-handed alpha
Helix 10
AB1
D
122 140Right-handed alpha
Helix 11
AB2
D
172 179Right-handed alpha
Helix 12
AB3
D
182 194Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 4ZJF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 95first strand
Strand 2
A
101 108anti-parallel
Strand 3
A
219 226anti-parallel
Strand 4
A
161 167anti-parallel
Strand 5
A
152 158anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 204first strand
Strand 2
A
211 214anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 95first strand
Strand 2
B
102 108anti-parallel
Strand 3
B
219 225anti-parallel
Strand 4
B
161 167anti-parallel
Strand 5
B
152 158anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
201 204first strand
Strand 2
B
211 214anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
91 95first strand
Strand 2
C
101 108anti-parallel
Strand 3
C
219 226anti-parallel
Strand 4
C
161 167anti-parallel
Strand 5
C
152 158anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
201 204first strand
Strand 2
C
211 214anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
91 95first strand
Strand 2
D
102 108anti-parallel
Strand 3
D
219 225anti-parallel
Strand 4
D
161 167anti-parallel
Strand 5
D
152 158anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
201 204first strand
Strand 2
D
211 214anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il