Analysis of interatomic Contacts of Structural Units in PDB entry:
4ZJJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4ZJJ entry

There are 4 chains in PDB entry 4ZJJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 249	GLU 539
B	GLU 251	GLU 539
C	GLU 251	LYS 542
D	GLU 252	THR 541

There are 64 helices in PDB entry 4ZJJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	249	261	Right-handed alpha
Helix 2	AA2	A	265	269	Right-handed alpha
Helix 3	AA3	A	310	322	Right-handed alpha
Helix 4	AA4	A	352	359	Right-handed alpha
Helix 5	AA5	A	362	383	Right-handed alpha
Helix 6	AA6	A	391	393	Right-handed 310
Helix 7	AA7	A	427	431	Right-handed 310
Helix 8	AA8	A	432	439	Right-handed alpha
Helix 9	AA9	A	443	460	Right-handed alpha
Helix 10	AB1	A	468	480	Right-handed alpha
Helix 11	AB2	A	486	490	Right-handed 310
Helix 12	AB3	A	491	502	Right-handed alpha
Helix 13	AB4	A	511	516	Right-handed alpha
Helix 14	AB5	A	517	524	Right-handed 310
Helix 15	AB6	A	526	529	Right-handed 310
Helix 16	AB7	A	530	539	Right-handed alpha
Helix 17	AB8	B	256	261	Right-handed alpha
Helix 18	AB9	B	265	269	Right-handed alpha
Helix 19	AC1	B	310	322	Right-handed alpha
Helix 20	AC2	B	352	359	Right-handed alpha
Helix 21	AC3	B	362	383	Right-handed alpha
Helix 22	AC4	B	391	393	Right-handed 310
Helix 23	AC5	B	427	431	Right-handed 310
Helix 24	AC6	B	432	439	Right-handed alpha
Helix 25	AC7	B	442	460	Right-handed alpha
Helix 26	AC8	B	468	480	Right-handed alpha
Helix 27	AC9	B	486	490	Right-handed 310
Helix 28	AD1	B	491	502	Right-handed alpha
Helix 29	AD2	B	511	516	Right-handed alpha
Helix 30	AD3	B	520	524	Right-handed 310
Helix 31	AD4	B	526	529	Right-handed 310
Helix 32	AD5	B	530	538	Right-handed alpha
Helix 33	AD6	C	256	261	Right-handed alpha
Helix 34	AD7	C	265	270	Right-handed alpha
Helix 35	AD8	C	309	322	Right-handed alpha
Helix 36	AD9	C	352	359	Right-handed alpha
Helix 37	AE1	C	362	383	Right-handed alpha
Helix 38	AE2	C	391	393	Right-handed 310
Helix 39	AE3	C	417	422	Right-handed 310
Helix 40	AE4	C	432	437	Right-handed alpha
Helix 41	AE5	C	443	458	Right-handed alpha
Helix 42	AE6	C	463	467	Right-handed 310
Helix 43	AE7	C	468	479	Right-handed alpha
Helix 44	AE8	C	486	490	Right-handed 310
Helix 45	AE9	C	491	502	Right-handed alpha
Helix 46	AF1	C	511	516	Right-handed alpha
Helix 47	AF2	C	518	523	Right-handed alpha
Helix 48	AF3	C	526	529	Right-handed 310
Helix 49	AF4	C	530	542	Right-handed alpha
Helix 50	AF5	D	253	261	Right-handed alpha
Helix 51	AF6	D	308	322	Right-handed alpha
Helix 52	AF7	D	352	359	Right-handed alpha
Helix 53	AF8	D	362	383	Right-handed alpha
Helix 54	AF9	D	391	393	Right-handed 310
Helix 55	AG1	D	433	438	Right-handed alpha
Helix 56	AG2	D	443	458	Right-handed alpha
Helix 57	AG3	D	463	467	Right-handed 310
Helix 58	AG4	D	468	479	Right-handed alpha
Helix 59	AG5	D	486	490	Right-handed 310
Helix 60	AG6	D	491	502	Right-handed alpha
Helix 61	AG7	D	511	516	Right-handed alpha
Helix 62	AG8	D	518	523	Right-handed alpha
Helix 63	AG9	D	526	529	Right-handed 310
Helix 64	AH1	D	530	541	Right-handed alpha

There are 10 sheets in PDB entry 4ZJJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	278	first strand
Strand 2	A	283	289	anti-parallel
Strand 3	A	295	301	anti-parallel
Strand 4	A	339	344	anti-parallel
Strand 5	A	330	336	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	351	first strand
Strand 2	A	395	397	anti-parallel
Strand 3	A	403	405	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	385	386	first strand
Strand 2	A	413	414	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	279	first strand
Strand 2	B	282	289	anti-parallel
Strand 3	B	295	301	anti-parallel
Strand 4	B	339	344	anti-parallel
Strand 5	B	330	336	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	351	first strand
Strand 2	B	395	397	anti-parallel
Strand 3	B	403	405	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	385	386	first strand
Strand 2	B	413	414	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	278	first strand
Strand 2	C	283	288	anti-parallel
Strand 3	C	295	301	anti-parallel
Strand 4	C	340	344	anti-parallel
Strand 5	C	330	334	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	350	351	first strand
Strand 2	C	395	397	anti-parallel
Strand 3	C	403	405	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	271	278	first strand
Strand 2	D	283	288	anti-parallel
Strand 3	D	296	301	anti-parallel
Strand 4	D	340	344	anti-parallel
Strand 5	D	330	334	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	350	351	first strand
Strand 2	D	395	397	anti-parallel
Strand 3	D	403	405	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4ZJJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
4ZJJ