Analysis of interatomic Contacts of Structural Units in PDB entry:
4ZKJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4ZKJ entry

There are 2 chains in PDB entry 4ZKJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1ILE 289
B
 ALA 2ILE 289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 4ZKJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 38Right-handed 310
Helix 2
AA2
A
52 61Right-handed alpha
Helix 3
AA3
A
89 96Right-handed alpha
Helix 4
AA4
A
98 124Right-handed alpha
Helix 5
AA5
A
126 140Right-handed alpha
Helix 6
AA6
A
147 162Right-handed alpha
Helix 7
AA7
A
164 168Right-handed 310
Helix 8
AA8
A
172 196Right-handed alpha
Helix 9
AA9
A
212 219Right-handed alpha
Helix 10
AB1
A
222 233Right-handed alpha
Helix 11
AB2
A
237 247Right-handed alpha
Helix 12
AB3
A
248 250Right-handed 310
Helix 13
AB4
A
262 279Right-handed alpha
Helix 14
AB5
B
36 38Right-handed 310
Helix 15
AB6
B
52 61Right-handed alpha
Helix 16
AB7
B
88 97Right-handed alpha
Helix 17
AB8
B
98 124Right-handed alpha
Helix 18
AB9
B
126 140Right-handed alpha
Helix 19
AC1
B
147 162Right-handed alpha
Helix 20
AC2
B
163 169Right-handed alpha
Helix 21
AC3
B
172 196Right-handed alpha
Helix 22
AC4
B
212 220Right-handed alpha
Helix 23
AC5
B
222 233Right-handed alpha
Helix 24
AC6
B
237 247Right-handed alpha
Helix 25
AC7
B
248 250Right-handed 310
Helix 26
AC8
B
262 279Right-handed alpha
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There are 4 sheets in PDB entry 4ZKJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 9first strand
Strand 2
A
40 43parallel
Strand 3
A
64 68parallel
Strand 4
A
74 80anti-parallel
Strand 5
B
74 80anti-parallel
Strand 6
B
64 68anti-parallel
Strand 7
B
40 43parallel
Strand 8
B
6 9parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 34first strand
Strand 2
A
21 25anti-parallel
Strand 3
A
13 18anti-parallel
Strand 4
A
48 51parallel
Strand 5
B
48 51anti-parallel
Strand 6
B
13 18parallel
Strand 7
B
21 25anti-parallel
Strand 8
B
30 34anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 255first strand
Strand 2
A
258 261anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
252 255first strand
Strand 2
B
258 261anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il