Analysis of interatomic Contacts of Structural Units in PDB entry:
4ZM4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4ZM4 entry

There are 6 chains in PDB entry 4ZM4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 10	LEU 443
B	THR 10	LEU 443
C	THR 10	LEU 443
D	THR 10	GLY 434
E	THR 10	LEU 443
F	THR 10	LEU 443

There are 89 helices in PDB entry 4ZM4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	20	Right-handed alpha
Helix 2	AA2	A	30	34	Right-handed 310
Helix 3	AA3	A	61	65	Right-handed 310
Helix 4	AA4	A	73	87	Right-handed alpha
Helix 5	AA5	A	95	108	Right-handed alpha
Helix 6	AA6	A	119	136	Right-handed alpha
Helix 7	AA7	A	194	206	Right-handed alpha
Helix 8	AA8	A	229	242	Right-handed alpha
Helix 9	AA9	A	259	265	Right-handed alpha
Helix 10	AB1	A	277	280	Right-handed 310
Helix 11	AB2	A	294	299	Right-handed alpha
Helix 12	AB3	A	311	327	Right-handed alpha
Helix 13	AB4	A	330	353	Right-handed alpha
Helix 14	AB5	A	383	391	Right-handed alpha
Helix 15	AB6	A	392	406	Right-handed alpha
Helix 16	AB7	A	425	442	Right-handed alpha
Helix 17	AB8	B	11	20	Right-handed alpha
Helix 18	AB9	B	61	65	Right-handed 310
Helix 19	AC1	B	73	87	Right-handed alpha
Helix 20	AC2	B	95	108	Right-handed alpha
Helix 21	AC3	B	119	136	Right-handed alpha
Helix 22	AC4	B	194	206	Right-handed alpha
Helix 23	AC5	B	229	242	Right-handed alpha
Helix 24	AC6	B	259	265	Right-handed alpha
Helix 25	AC7	B	275	280	Right-handed 310
Helix 26	AC8	B	294	299	Right-handed alpha
Helix 27	AC9	B	311	327	Right-handed alpha
Helix 28	AD1	B	330	353	Right-handed alpha
Helix 29	AD2	B	383	391	Right-handed alpha
Helix 30	AD3	B	392	406	Right-handed alpha
Helix 31	AD4	B	425	442	Right-handed alpha
Helix 32	AD5	C	11	22	Right-handed alpha
Helix 33	AD6	C	30	34	Right-handed 310
Helix 34	AD7	C	73	87	Right-handed alpha
Helix 35	AD8	C	95	108	Right-handed alpha
Helix 36	AD9	C	119	136	Right-handed alpha
Helix 37	AE1	C	194	206	Right-handed alpha
Helix 38	AE2	C	229	242	Right-handed alpha
Helix 39	AE3	C	259	265	Right-handed alpha
Helix 40	AE4	C	277	280	Right-handed 310
Helix 41	AE5	C	294	299	Right-handed alpha
Helix 42	AE6	C	311	327	Right-handed alpha
Helix 43	AE7	C	330	353	Right-handed alpha
Helix 44	AE8	C	383	391	Right-handed alpha
Helix 45	AE9	C	392	406	Right-handed alpha
Helix 46	AF1	C	425	442	Right-handed alpha
Helix 47	AF2	D	11	22	Right-handed alpha
Helix 48	AF3	D	30	34	Right-handed 310
Helix 49	AF4	D	73	87	Right-handed alpha
Helix 50	AF5	D	95	108	Right-handed alpha
Helix 51	AF6	D	119	136	Right-handed alpha
Helix 52	AF7	D	194	206	Right-handed alpha
Helix 53	AF8	D	229	242	Right-handed alpha
Helix 54	AF9	D	259	265	Right-handed alpha
Helix 55	AG1	D	275	280	Right-handed 310
Helix 56	AG2	D	294	299	Right-handed alpha
Helix 57	AG3	D	311	327	Right-handed alpha
Helix 58	AG4	D	330	344	Right-handed alpha
Helix 59	AG5	D	383	388	Right-handed alpha
Helix 60	AG6	D	392	406	Right-handed alpha
Helix 61	AG7	D	429	434	Right-handed alpha
Helix 62	AG8	E	11	22	Right-handed alpha
Helix 63	AG9	E	73	86	Right-handed alpha
Helix 64	AH1	E	95	108	Right-handed alpha
Helix 65	AH2	E	119	136	Right-handed alpha
Helix 66	AH3	E	194	206	Right-handed alpha
Helix 67	AH4	E	229	242	Right-handed alpha
Helix 68	AH5	E	259	265	Right-handed alpha
Helix 69	AH6	E	275	280	Right-handed 310
Helix 70	AH7	E	294	299	Right-handed alpha
Helix 71	AH8	E	311	327	Right-handed alpha
Helix 72	AH9	E	330	353	Right-handed alpha
Helix 73	AI1	E	383	391	Right-handed alpha
Helix 74	AI2	E	392	406	Right-handed alpha
Helix 75	AI3	E	425	442	Right-handed alpha
Helix 76	AI4	F	11	20	Right-handed alpha
Helix 77	AI5	F	73	87	Right-handed alpha
Helix 78	AI6	F	95	108	Right-handed alpha
Helix 79	AI7	F	119	136	Right-handed alpha
Helix 80	AI8	F	194	206	Right-handed alpha
Helix 81	AI9	F	229	242	Right-handed alpha
Helix 82	AJ1	F	259	265	Right-handed alpha
Helix 83	AJ2	F	275	280	Right-handed 310
Helix 84	AJ3	F	294	299	Right-handed alpha
Helix 85	AJ4	F	311	327	Right-handed alpha
Helix 86	AJ5	F	330	353	Right-handed alpha
Helix 87	AJ6	F	383	391	Right-handed alpha
Helix 88	AJ7	F	392	406	Right-handed alpha
Helix 89	AJ8	F	425	442	Right-handed alpha

There are 18 sheets in PDB entry 4ZM4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	45	first strand
Strand 2	A	48	51	anti-parallel
Strand 3	A	56	59	anti-parallel
Strand 4	A	408	409	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	117	first strand
Strand 2	A	285	289	anti-parallel
Strand 3	A	271	275	anti-parallel
Strand 4	A	244	248	parallel
Strand 5	A	209	214	parallel
Strand 6	A	139	143	parallel
Strand 7	A	187	190	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	357	362	first strand
Strand 2	A	365	370	anti-parallel
Strand 3	A	418	419	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	45	first strand
Strand 2	B	48	51	anti-parallel
Strand 3	B	56	59	anti-parallel
Strand 4	B	408	409	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	117	first strand
Strand 2	B	285	289	anti-parallel
Strand 3	B	271	274	anti-parallel
Strand 4	B	244	248	parallel
Strand 5	B	209	214	parallel
Strand 6	B	139	143	parallel
Strand 7	B	187	190	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	357	362	first strand
Strand 2	B	365	370	anti-parallel
Strand 3	B	418	419	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	45	first strand
Strand 2	C	48	51	anti-parallel
Strand 3	C	56	59	anti-parallel
Strand 4	C	408	409	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	117	first strand
Strand 2	C	285	289	anti-parallel
Strand 3	C	271	275	anti-parallel
Strand 4	C	244	248	parallel
Strand 5	C	209	214	parallel
Strand 6	C	139	143	parallel
Strand 7	C	187	190	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	357	362	first strand
Strand 2	C	365	370	anti-parallel
Strand 3	C	418	419	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	45	first strand
Strand 2	D	48	51	anti-parallel
Strand 3	D	56	58	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	113	117	first strand
Strand 2	D	285	289	anti-parallel
Strand 3	D	271	274	anti-parallel
Strand 4	D	244	248	parallel
Strand 5	D	209	214	parallel
Strand 6	D	139	143	parallel
Strand 7	D	187	190	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	360	362	first strand
Strand 2	D	365	367	anti-parallel
Strand 3	D	418	419	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	45	first strand
Strand 2	E	48	51	anti-parallel
Strand 3	E	56	59	anti-parallel
Strand 4	E	408	409	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	113	117	first strand
Strand 2	E	285	289	anti-parallel
Strand 3	E	271	274	anti-parallel
Strand 4	E	244	248	parallel
Strand 5	E	209	214	parallel
Strand 6	E	139	143	parallel
Strand 7	E	187	190	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	357	362	first strand
Strand 2	E	365	370	anti-parallel
Strand 3	E	418	419	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	41	45	first strand
Strand 2	F	48	51	anti-parallel
Strand 3	F	56	59	anti-parallel
Strand 4	F	408	409	parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	113	117	first strand
Strand 2	F	285	289	anti-parallel
Strand 3	F	271	274	anti-parallel
Strand 4	F	244	248	parallel
Strand 5	F	209	214	parallel
Strand 6	F	139	143	parallel
Strand 7	F	187	190	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	357	362	first strand
Strand 2	F	365	370	anti-parallel
Strand 3	F	418	419	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4ZM4

Analysis of interatomic Contacts of Structural Units in PDB entry:
4ZM4