Analysis of interatomic Contacts of Structural Units in PDB entry:
4ZMM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4ZMM entry

There are 2 chains in PDB entry 4ZMM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 178VAL 341
B
 SER 181VAL 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 4ZMM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
191 209Right-handed alpha
Helix 2
AA2
A
222 231Right-handed alpha
Helix 3
AA3
A
231 249Right-handed alpha
Helix 4
AA4
A
272 290Right-handed alpha
Helix 5
AA5
A
315 333Right-handed alpha
Helix 6
AA6
B
191 209Right-handed alpha
Helix 7
AA7
B
222 231Right-handed alpha
Helix 8
AA8
B
231 249Right-handed alpha
Helix 9
AA9
B
272 290Right-handed alpha
Helix 10
AB1
B
315 334Right-handed alpha
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There are 4 sheets in PDB entry 4ZMM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 260first strand
Strand 2
A
263 270anti-parallel
Strand 3
A
212 220anti-parallel
Strand 4
A
303 309anti-parallel
Strand 5
A
338 341parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 294first strand
Strand 2
A
297 299anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 260first strand
Strand 2
B
263 270anti-parallel
Strand 3
B
212 220anti-parallel
Strand 4
B
303 309anti-parallel
Strand 5
B
338 340parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
292 293first strand
Strand 2
B
298 299anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il