Analysis of interatomic Contacts of Structural Units in PDB entry:
4ZQR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4ZQR entry

There are 4 chains in PDB entry 4ZQR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 29	ALA 528
B	THR 27	ALA 528
C	THR 26	ALA 528
D	THR 27	ALA 404

There are 63 helices in PDB entry 4ZQR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	46	48	Right-handed 310
Helix 2	AA2	A	60	64	Right-handed 310
Helix 3	AA3	A	90	100	Right-handed alpha
Helix 4	AA4	A	111	124	Right-handed alpha
Helix 5	AA5	A	262	275	Right-handed alpha
Helix 6	AA6	A	289	304	Right-handed alpha
Helix 7	AA7	A	316	327	Right-handed alpha
Helix 8	AA8	A	342	347	Right-handed alpha
Helix 9	AA9	A	352	365	Right-handed alpha
Helix 10	AB1	A	366	368	Right-handed 310
Helix 11	AB2	A	379	389	Right-handed alpha
Helix 12	AB3	A	397	402	Right-handed alpha
Helix 13	AB4	A	426	431	Right-handed alpha
Helix 14	AB5	A	469	489	Right-handed alpha
Helix 15	AB6	A	492	497	Right-handed alpha
Helix 16	AB7	A	505	513	Right-handed alpha
Helix 17	AB8	B	46	48	Right-handed 310
Helix 18	AB9	B	60	64	Right-handed 310
Helix 19	AC1	B	90	100	Right-handed alpha
Helix 20	AC2	B	111	124	Right-handed alpha
Helix 21	AC3	B	262	275	Right-handed alpha
Helix 22	AC4	B	289	304	Right-handed alpha
Helix 23	AC5	B	316	327	Right-handed alpha
Helix 24	AC6	B	342	347	Right-handed alpha
Helix 25	AC7	B	352	365	Right-handed alpha
Helix 26	AC8	B	366	368	Right-handed 310
Helix 27	AC9	B	379	389	Right-handed alpha
Helix 28	AD1	B	397	402	Right-handed alpha
Helix 29	AD2	B	426	431	Right-handed alpha
Helix 30	AD3	B	469	489	Right-handed alpha
Helix 31	AD4	B	492	497	Right-handed alpha
Helix 32	AD5	B	505	513	Right-handed alpha
Helix 33	AD6	C	46	48	Right-handed 310
Helix 34	AD7	C	90	100	Right-handed alpha
Helix 35	AD8	C	111	124	Right-handed alpha
Helix 36	AD9	C	262	276	Right-handed alpha
Helix 37	AE1	C	289	304	Right-handed alpha
Helix 38	AE2	C	316	327	Right-handed alpha
Helix 39	AE3	C	342	347	Right-handed alpha
Helix 40	AE4	C	352	365	Right-handed alpha
Helix 41	AE5	C	366	368	Right-handed 310
Helix 42	AE6	C	379	389	Right-handed alpha
Helix 43	AE7	C	397	402	Right-handed alpha
Helix 44	AE8	C	426	431	Right-handed alpha
Helix 45	AE9	C	469	489	Right-handed alpha
Helix 46	AF1	C	492	497	Right-handed alpha
Helix 47	AF2	C	505	513	Right-handed alpha
Helix 48	AF3	D	46	48	Right-handed 310
Helix 49	AF4	D	60	64	Right-handed 310
Helix 50	AF5	D	90	100	Right-handed alpha
Helix 51	AF6	D	111	124	Right-handed alpha
Helix 52	AF7	D	262	275	Right-handed alpha
Helix 53	AF8	D	289	304	Right-handed alpha
Helix 54	AF9	D	316	327	Right-handed alpha
Helix 55	AG1	D	342	347	Right-handed alpha
Helix 56	AG2	D	352	365	Right-handed alpha
Helix 57	AG3	D	366	368	Right-handed 310
Helix 58	AG4	D	379	389	Right-handed alpha
Helix 59	AG5	D	397	402	Right-handed alpha
Helix 60	AG6	D	426	431	Right-handed alpha
Helix 61	AG7	D	469	489	Right-handed alpha
Helix 62	AG8	D	492	497	Right-handed alpha
Helix 63	AG9	D	505	513	Right-handed alpha

There are 16 sheets in PDB entry 4ZQR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	44	first strand
Strand 2	C	501	504	parallel
Strand 3	C	50	52	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	52	first strand
Strand 2	A	501	504	anti-parallel
Strand 3	D	40	44	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	69	first strand
Strand 2	A	75	76	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	82	first strand
Strand 2	A	103	106	parallel
Strand 3	A	256	259	parallel
Strand 4	A	279	283	parallel
Strand 5	A	308	314	parallel
Strand 6	A	330	333	parallel
Strand 7	A	371	374	parallel
Strand 8	A	393	396	parallel
Strand 9	A	80	82	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	413	first strand
Strand 2	A	416	422	anti-parallel
Strand 3	A	461	465	anti-parallel
Strand 4	C	518	521	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	521	first strand
Strand 2	D	461	465	anti-parallel
Strand 3	D	416	422	anti-parallel
Strand 4	D	411	413	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	44	first strand
Strand 2	D	501	504	parallel
Strand 3	D	50	52	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	52	first strand
Strand 2	B	501	504	anti-parallel
Strand 3	C	40	44	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	69	first strand
Strand 2	B	75	76	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	82	first strand
Strand 2	B	103	106	parallel
Strand 3	B	256	259	parallel
Strand 4	B	279	283	parallel
Strand 5	B	308	314	parallel
Strand 6	B	330	333	parallel
Strand 7	B	371	374	parallel
Strand 8	B	393	396	parallel
Strand 9	B	80	82	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	413	first strand
Strand 2	B	416	422	anti-parallel
Strand 3	B	461	465	anti-parallel
Strand 4	D	518	521	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	518	521	first strand
Strand 2	C	461	465	anti-parallel
Strand 3	C	416	422	anti-parallel
Strand 4	C	411	413	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	69	first strand
Strand 2	C	75	76	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	82	first strand
Strand 2	C	103	106	parallel
Strand 3	C	256	259	parallel
Strand 4	C	279	283	parallel
Strand 5	C	308	314	parallel
Strand 6	C	330	333	parallel
Strand 7	C	371	374	parallel
Strand 8	C	393	396	parallel
Strand 9	C	80	82	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	69	first strand
Strand 2	D	75	76	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	82	first strand
Strand 2	D	103	106	parallel
Strand 3	D	256	259	parallel
Strand 4	D	279	283	parallel
Strand 5	D	308	314	parallel
Strand 6	D	330	333	parallel
Strand 7	D	371	374	parallel
Strand 8	D	393	396	parallel
Strand 9	D	80	82	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4ZQR

Analysis of interatomic Contacts of Structural Units in PDB entry:
4ZQR