Analysis of interatomic Contacts of Structural Units in PDB entry:
4ZRJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4ZRJ entry

There are 2 chains in PDB entry 4ZRJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 19GLN 320
B
 THR 512LEU 595
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 4ZRJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 55Right-handed alpha
Helix 2
AA2
A
58 60Right-handed 310
Helix 3
AA3
A
80 84Right-handed 310
Helix 4
AA4
A
104 109Right-handed alpha
Helix 5
AA5
A
111 128Right-handed alpha
Helix 6
AA6
A
134 151Right-handed alpha
Helix 7
AA7
A
170 177Right-handed alpha
Helix 8
AA8
A
180 193Right-handed alpha
Helix 9
AA9
A
194 196Right-handed 310
Helix 10
AB1
A
199 212Right-handed alpha
Helix 11
AB2
A
289 312Right-handed alpha
Helix 12
AB3
B
513 548Right-handed alpha
Helix 13
AB4
B
549 550Right-handed 310
Helix 14
AB5
B
551 555Right-handed 310
Helix 15
AB6
B
556 563Right-handed alpha
Helix 16
AB7
B
573 582Right-handed alpha
Helix 17
AB8
B
584 595Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 4ZRJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 38first strand
Strand 2
A
21 27anti-parallel
Strand 3
A
92 98parallel
Strand 4
A
62 68anti-parallel
Strand 5
A
71 74anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 225first strand
Strand 2
A
231 236anti-parallel
Strand 3
A
240 244anti-parallel
Strand 4
A
254 257anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 267first strand
Strand 2
A
270 275anti-parallel
Strand 3
A
283 286anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il