Analysis of interatomic Contacts of Structural Units in PDB entry:
4ZVG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4ZVG entry

There are 2 chains in PDB entry 4ZVG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 297LEU 461
B
 ASP 298LEU 461
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 4ZVG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
298 303Right-handed 310
Helix 2
AA2
A
308 324Right-handed alpha
Helix 3
AA3
A
336 345Right-handed alpha
Helix 4
AA4
A
345 362Right-handed alpha
Helix 5
AA5
A
386 404Right-handed alpha
Helix 6
AA6
A
430 448Right-handed alpha
Helix 7
AA7
B
298 302Right-handed 310
Helix 8
AA8
B
308 324Right-handed alpha
Helix 9
AA9
B
336 345Right-handed alpha
Helix 10
AB1
B
345 362Right-handed alpha
Helix 11
AB2
B
386 404Right-handed alpha
Helix 12
AB3
B
430 448Right-handed alpha
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There are 2 sheets in PDB entry 4ZVG. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 305first strand
Strand 2
A
369 372parallel
Strand 3
A
377 383anti-parallel
Strand 4
A
327 334anti-parallel
Strand 5
A
418 424anti-parallel
Strand 6
A
452 455parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
304 305first strand
Strand 2
B
369 372parallel
Strand 3
B
377 383anti-parallel
Strand 4
B
327 334anti-parallel
Strand 5
B
418 424anti-parallel
Strand 6
B
452 455parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il