Analysis of interatomic Contacts of Structural Units in PDB entry:
4ZWP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4ZWP entry

There are 2 chains in PDB entry 4ZWP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3ASP 440
B
 ASN 2ASP 440
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 4ZWP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 26Right-handed alpha
Helix 2
AA2
A
53 58Right-handed alpha
Helix 3
AA3
A
98 104Right-handed 310
Helix 4
AA4
A
111 118Right-handed 310
Helix 5
AA5
A
122 124Right-handed 310
Helix 6
AA6
A
132 140Right-handed alpha
Helix 7
AA7
A
146 158Right-handed alpha
Helix 8
AA8
A
161 188Right-handed alpha
Helix 9
AA9
A
191 204Right-handed alpha
Helix 10
AB1
A
206 210Right-handed 310
Helix 11
AB2
A
220 224Right-handed 310
Helix 12
AB3
A
266 284Right-handed alpha
Helix 13
AB4
A
291 310Right-handed alpha
Helix 14
AB5
A
316 323Right-handed alpha
Helix 15
AB6
A
325 329Right-handed 310
Helix 16
AB7
A
387 397Right-handed alpha
Helix 17
AB8
A
398 403Right-handed 310
Helix 18
AB9
A
404 412Right-handed alpha
Helix 19
AC1
A
433 437Right-handed alpha
Helix 20
AC2
B
3 26Right-handed alpha
Helix 21
AC3
B
53 58Right-handed alpha
Helix 22
AC4
B
100 104Right-handed 310
Helix 23
AC5
B
111 115Right-handed 310
Helix 24
AC6
B
132 139Right-handed alpha
Helix 25
AC7
B
146 157Right-handed alpha
Helix 26
AC8
B
161 188Right-handed alpha
Helix 27
AC9
B
191 203Right-handed alpha
Helix 28
AD1
B
206 210Right-handed 310
Helix 29
AD2
B
220 224Right-handed 310
Helix 30
AD3
B
266 284Right-handed alpha
Helix 31
AD4
B
291 310Right-handed alpha
Helix 32
AD5
B
316 323Right-handed alpha
Helix 33
AD6
B
325 330Right-handed alpha
Helix 34
AD7
B
387 395Right-handed alpha
Helix 35
AD8
B
399 403Right-handed 310
Helix 36
AD9
B
404 412Right-handed alpha
Helix 37
AE1
B
433 437Right-handed alpha
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There are 8 sheets in PDB entry 4ZWP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 109first strand
Strand 2
A
79 83parallel
Strand 3
A
69 72anti-parallel
Strand 4
A
30 34anti-parallel
Strand 5
A
126 129parallel
Strand 6
A
143 144parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 218first strand
Strand 2
A
240 249anti-parallel
Strand 3
A
252 261anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 337first strand
Strand 2
A
377 380anti-parallel
Strand 3
A
421 425anti-parallel
Strand 4
A
430 432anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 385first strand
Strand 2
A
416 418anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 109first strand
Strand 2
B
79 83parallel
Strand 3
B
69 72anti-parallel
Strand 4
B
30 34anti-parallel
Strand 5
B
126 129parallel
Strand 6
B
143 144parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 218first strand
Strand 2
B
240 249anti-parallel
Strand 3
B
252 261anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
377 380first strand
Strand 2
B
421 425anti-parallel
Strand 3
B
430 432anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
383 385first strand
Strand 2
B
416 418anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il