Analysis of interatomic Contacts of Structural Units in PDB entry:
4ZYJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4ZYJ entry

There are 4 chains in PDB entry 4ZYJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 11	ARG 405
B	VAL 12	ARG 405
C	GLY 11	ARG 405
D	GLY 11	ARG 405

There are 79 helices in PDB entry 4ZYJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	35	Right-handed alpha
Helix 2	AA2	A	36	51	Right-handed alpha
Helix 3	AA3	A	54	64	Right-handed alpha
Helix 4	AA4	A	65	69	Right-handed 310
Helix 5	AA5	A	72	76	Right-handed 310
Helix 6	AA6	A	82	95	Right-handed alpha
Helix 7	AA7	A	97	121	Right-handed alpha
Helix 8	AA8	A	125	138	Right-handed alpha
Helix 9	AA9	A	175	179	Right-handed 310
Helix 10	AB1	A	220	224	Right-handed 310
Helix 11	AB2	A	236	238	Right-handed 310
Helix 12	AB3	A	250	252	Right-handed 310
Helix 13	AB4	A	253	260	Right-handed alpha
Helix 14	AB5	A	261	263	Right-handed 310
Helix 15	AB6	A	264	287	Right-handed alpha
Helix 16	AB7	A	290	323	Right-handed alpha
Helix 17	AB8	A	328	363	Right-handed alpha
Helix 18	AB9	A	364	368	Right-handed 310
Helix 19	AC1	A	371	380	Right-handed alpha
Helix 20	AC2	A	381	386	Right-handed 310
Helix 21	AC3	A	390	404	Right-handed alpha
Helix 22	AC4	B	23	34	Right-handed alpha
Helix 23	AC5	B	36	51	Right-handed alpha
Helix 24	AC6	B	54	64	Right-handed alpha
Helix 25	AC7	B	82	95	Right-handed alpha
Helix 26	AC8	B	97	121	Right-handed alpha
Helix 27	AC9	B	122	124	Right-handed 310
Helix 28	AD1	B	125	138	Right-handed alpha
Helix 29	AD2	B	175	179	Right-handed 310
Helix 30	AD3	B	220	224	Right-handed 310
Helix 31	AD4	B	236	238	Right-handed 310
Helix 32	AD5	B	250	252	Right-handed 310
Helix 33	AD6	B	253	260	Right-handed alpha
Helix 34	AD7	B	263	285	Right-handed alpha
Helix 35	AD8	B	290	322	Right-handed alpha
Helix 36	AD9	B	328	363	Right-handed alpha
Helix 37	AE1	B	364	368	Right-handed 310
Helix 38	AE2	B	371	381	Right-handed alpha
Helix 39	AE3	B	382	386	Right-handed 310
Helix 40	AE4	B	390	404	Right-handed alpha
Helix 41	AE5	C	23	34	Right-handed alpha
Helix 42	AE6	C	36	51	Right-handed alpha
Helix 43	AE7	C	54	64	Right-handed alpha
Helix 44	AE8	C	65	69	Right-handed 310
Helix 45	AE9	C	82	95	Right-handed alpha
Helix 46	AF1	C	97	121	Right-handed alpha
Helix 47	AF2	C	124	138	Right-handed alpha
Helix 48	AF3	C	175	179	Right-handed 310
Helix 49	AF4	C	220	224	Right-handed 310
Helix 50	AF5	C	250	252	Right-handed 310
Helix 51	AF6	C	253	260	Right-handed alpha
Helix 52	AF7	C	261	263	Right-handed 310
Helix 53	AF8	C	264	286	Right-handed alpha
Helix 54	AF9	C	290	323	Right-handed alpha
Helix 55	AG1	C	328	363	Right-handed alpha
Helix 56	AG2	C	364	368	Right-handed 310
Helix 57	AG3	C	371	380	Right-handed alpha
Helix 58	AG4	C	381	386	Right-handed 310
Helix 59	AG5	C	390	404	Right-handed alpha
Helix 60	AG6	D	23	35	Right-handed alpha
Helix 61	AG7	D	36	51	Right-handed alpha
Helix 62	AG8	D	54	64	Right-handed alpha
Helix 63	AG9	D	65	69	Right-handed 310
Helix 64	AH1	D	72	76	Right-handed 310
Helix 65	AH2	D	82	95	Right-handed alpha
Helix 66	AH3	D	97	121	Right-handed alpha
Helix 67	AH4	D	124	138	Right-handed alpha
Helix 68	AH5	D	175	179	Right-handed 310
Helix 69	AH6	D	220	224	Right-handed 310
Helix 70	AH7	D	236	238	Right-handed 310
Helix 71	AH8	D	252	260	Right-handed alpha
Helix 72	AH9	D	261	263	Right-handed 310
Helix 73	AI1	D	264	286	Right-handed alpha
Helix 74	AI2	D	290	324	Right-handed alpha
Helix 75	AI3	D	328	363	Right-handed alpha
Helix 76	AI4	D	364	368	Right-handed 310
Helix 77	AI5	D	371	380	Right-handed alpha
Helix 78	AI6	D	381	386	Right-handed 310
Helix 79	AI7	D	390	404	Right-handed alpha

There are 9 sheets in PDB entry 4ZYJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	146	first strand
Strand 2	A	181	184	parallel
Strand 3	A	196	203	anti-parallel
Strand 4	A	186	189	anti-parallel
Strand 5	A	155	157	parallel
Strand 6	A	164	173	anti-parallel
Strand 7	A	226	235	anti-parallel
Strand 8	A	209	212	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	146	first strand
Strand 2	A	181	184	parallel
Strand 3	A	196	203	anti-parallel
Strand 4	A	240	243	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	143	146	first strand
Strand 2	B	181	184	parallel
Strand 3	B	197	203	anti-parallel
Strand 4	B	186	188	anti-parallel
Strand 5	B	155	156	parallel
Strand 6	B	165	173	anti-parallel
Strand 7	B	226	234	anti-parallel
Strand 8	B	209	211	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	143	146	first strand
Strand 2	B	181	184	parallel
Strand 3	B	197	203	anti-parallel
Strand 4	B	240	242	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	146	first strand
Strand 2	C	181	184	parallel
Strand 3	C	201	203	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	149	first strand
Strand 2	C	164	173	anti-parallel
Strand 3	C	155	158	anti-parallel
Strand 4	C	186	189	parallel
Strand 5	C	196	198	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	149	first strand
Strand 2	C	164	173	anti-parallel
Strand 3	C	226	235	anti-parallel
Strand 4	C	209	211	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	143	146	first strand
Strand 2	D	181	184	parallel
Strand 3	D	196	203	anti-parallel
Strand 4	D	186	189	anti-parallel
Strand 5	D	155	158	parallel
Strand 6	D	164	173	anti-parallel
Strand 7	D	226	235	anti-parallel
Strand 8	D	209	211	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	149	first strand
Strand 2	D	164	173	anti-parallel
Strand 3	D	155	158	anti-parallel
Strand 4	D	186	189	parallel
Strand 5	D	196	203	anti-parallel
Strand 6	D	240	242	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4ZYJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
4ZYJ