Analysis of interatomic Contacts of Structural Units in PDB entry:
4ZZP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4ZZP entry

There are 2 chains in PDB entry 4ZZP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2LYS 437
B
 LYS 2LYS 437
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 4ZZP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
36 39Right-handed 310
Helix 2
2
A
62 70Right-handed alpha
Helix 3
3
A
162 167Right-handed 310
Helix 4
4
A
332 344Right-handed alpha
Helix 5
5
A
347 352Right-handed alpha
Helix 6
6
A
353 364Right-handed alpha
Helix 7
7
A
409 417Right-handed alpha
Helix 8
8
B
36 39Right-handed 310
Helix 9
9
B
62 70Right-handed alpha
Helix 10
10
B
162 167Right-handed 310
Helix 11
11
B
240 242Right-handed 310
Helix 12
12
B
332 344Right-handed alpha
Helix 13
13
B
347 352Right-handed alpha
Helix 14
14
B
353 364Right-handed alpha
Helix 15
15
B
380 385Right-handed alpha
Helix 16
16
B
409 417Right-handed alpha
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There are 20 sheets in PDB entry 4ZZP. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, BA, BB, BC, BD, BE, BF, BG, BH,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
71 72parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 86first strand
Strand 2
A
89 93parallel
Strand 3
A
421 431parallel
Strand 4
A
124 131anti-parallel
Strand 5
A
285 293anti-parallel
Strand 6
A
302 311anti-parallel
Strand 7
A
314 317anti-parallel
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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 86first strand
Strand 2
A
89 93parallel
Strand 3
A
421 431parallel
Strand 4
A
13 19parallel
Strand 5
A
25 34anti-parallel
Strand 6
A
105 112anti-parallel
Strand 7
A
115 116anti-parallel
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There are 10 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 86first strand
Strand 2
A
89 93parallel
Strand 3
A
421 431parallel
Strand 4
A
13 19parallel
Strand 5
A
25 34anti-parallel
Strand 6
A
105 112anti-parallel
Strand 7
A
366 374anti-parallel
Strand 8
A
139 146anti-parallel
Strand 9
A
211 217anti-parallel
Strand 10
A
222 227anti-parallel
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There are 8 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 86first strand
Strand 2
A
89 93parallel
Strand 3
A
421 431parallel
Strand 4
A
13 19parallel
Strand 5
A
25 34anti-parallel
Strand 6
A
105 112anti-parallel
Strand 7
A
366 374anti-parallel
Strand 8
A
118 119anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 116first strand
Strand 2
A
105 112anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
54 55anti-parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 97first strand
Strand 2
A
101 103anti-parallel
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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 182first strand
Strand 2
A
185 186anti-parallel
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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 193first strand
Strand 2
A
201 202anti-parallel
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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 208first strand
Strand 2
A
235 238anti-parallel
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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 274first strand
Strand 2
A
279 280parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 3first strand
Strand 2
B
71 72parallel
Strand 3
B
41 42anti-parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 86first strand
Strand 2
B
89 93anti-parallel
Strand 3
B
421 430anti-parallel
Strand 4
B
125 131anti-parallel
Strand 5
B
285 293anti-parallel
Strand 6
B
302 311anti-parallel
Strand 7
B
314 317anti-parallel
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There are 10 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 86first strand
Strand 2
B
89 93anti-parallel
Strand 3
B
421 430anti-parallel
Strand 4
B
13 19parallel
Strand 5
B
25 34anti-parallel
Strand 6
B
105 110anti-parallel
Strand 7
B
367 374anti-parallel
Strand 8
B
139 146anti-parallel
Strand 9
B
211 217anti-parallel
Strand 10
B
222 227anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 51first strand
Strand 2
B
54 55anti-parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 97first strand
Strand 2
B
101 103anti-parallel
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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 193first strand
Strand 2
B
201 202anti-parallel
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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
205 208first strand
Strand 2
B
235 238anti-parallel
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There are 2 strands in BH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
273 274first strand
Strand 2
B
279 280parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il