Analysis of interatomic Contacts of Structural Units in PDB entry:
5A01

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5A01 entry

There are 3 chains in PDB entry 5A01 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 350	VAL 1059
B	GLY 350	VAL 1059
C	GLY 350	VAL 1059

There are113 helices in PDB entry 5A01. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	352	369	Right-handed alpha
Helix 2	2	A	371	386	Right-handed alpha
Helix 3	3	A	389	403	Right-handed alpha
Helix 4	4	A	405	420	Right-handed alpha
Helix 5	5	A	423	437	Right-handed alpha
Helix 6	6	A	439	454	Right-handed alpha
Helix 7	7	A	457	471	Right-handed alpha
Helix 8	8	A	473	488	Right-handed alpha
Helix 9	9	A	491	505	Right-handed alpha
Helix 10	10	A	510	528	Right-handed alpha
Helix 11	11	A	538	542	Right-handed 310
Helix 12	12	A	545	566	Right-handed alpha
Helix 13	13	A	596	603	Right-handed alpha
Helix 14	14	A	604	609	Right-handed alpha
Helix 15	15	A	627	637	Right-handed alpha
Helix 16	16	A	644	646	Right-handed 310
Helix 17	17	A	648	660	Right-handed alpha
Helix 18	18	A	676	681	Right-handed alpha
Helix 19	19	A	713	720	Right-handed 310
Helix 20	20	A	735	740	Right-handed alpha
Helix 21	21	A	741	744	Right-handed 310
Helix 22	22	A	769	776	Right-handed alpha
Helix 23	23	A	803	812	Right-handed alpha
Helix 24	24	A	853	856	Right-handed 310
Helix 25	25	A	869	873	Right-handed 310
Helix 26	26	A	874	887	Right-handed alpha
Helix 27	27	A	901	913	Right-handed alpha
Helix 28	28	A	916	918	Right-handed 310
Helix 29	29	A	927	935	Right-handed alpha
Helix 30	30	A	936	938	Right-handed 310
Helix 31	31	A	949	959	Right-handed alpha
Helix 32	32	A	970	973	Right-handed 310
Helix 33	33	A	974	984	Right-handed alpha
Helix 34	34	A	985	988	Right-handed 310
Helix 35	35	A	992	1004	Right-handed alpha
Helix 36	36	A	1006	1024	Right-handed alpha
Helix 37	37	A	1028	1049	Right-handed alpha
Helix 38	38	B	352	369	Right-handed alpha
Helix 39	39	B	371	386	Right-handed alpha
Helix 40	40	B	389	403	Right-handed alpha
Helix 41	41	B	405	420	Right-handed alpha
Helix 42	42	B	423	437	Right-handed alpha
Helix 43	43	B	439	454	Right-handed alpha
Helix 44	44	B	457	471	Right-handed alpha
Helix 45	45	B	473	488	Right-handed alpha
Helix 46	46	B	491	505	Right-handed alpha
Helix 47	47	B	510	528	Right-handed alpha
Helix 48	48	B	538	542	Right-handed 310
Helix 49	49	B	545	566	Right-handed alpha
Helix 50	50	B	596	603	Right-handed alpha
Helix 51	51	B	604	609	Right-handed alpha
Helix 52	52	B	627	637	Right-handed alpha
Helix 53	53	B	644	646	Right-handed 310
Helix 54	54	B	648	660	Right-handed alpha
Helix 55	55	B	676	681	Right-handed alpha
Helix 56	56	B	713	720	Right-handed 310
Helix 57	57	B	735	740	Right-handed alpha
Helix 58	58	B	741	744	Right-handed 310
Helix 59	59	B	769	776	Right-handed alpha
Helix 60	60	B	803	813	Right-handed alpha
Helix 61	61	B	853	856	Right-handed 310
Helix 62	62	B	869	873	Right-handed 310
Helix 63	63	B	874	887	Right-handed alpha
Helix 64	64	B	901	913	Right-handed alpha
Helix 65	65	B	916	918	Right-handed 310
Helix 66	66	B	927	935	Right-handed alpha
Helix 67	67	B	936	938	Right-handed 310
Helix 68	68	B	949	959	Right-handed alpha
Helix 69	69	B	970	973	Right-handed 310
Helix 70	70	B	974	984	Right-handed alpha
Helix 71	71	B	985	988	Right-handed 310
Helix 72	72	B	992	1006	Right-handed alpha
Helix 73	73	B	1006	1024	Right-handed alpha
Helix 74	74	B	1025	1027	Right-handed 310
Helix 75	75	B	1028	1049	Right-handed alpha
Helix 76	76	C	352	369	Right-handed alpha
Helix 77	77	C	371	386	Right-handed alpha
Helix 78	78	C	389	403	Right-handed alpha
Helix 79	79	C	405	420	Right-handed alpha
Helix 80	80	C	423	437	Right-handed alpha
Helix 81	81	C	439	454	Right-handed alpha
Helix 82	82	C	457	471	Right-handed alpha
Helix 83	83	C	473	488	Right-handed alpha
Helix 84	84	C	491	505	Right-handed alpha
Helix 85	85	C	510	528	Right-handed alpha
Helix 86	86	C	538	542	Right-handed 310
Helix 87	87	C	545	566	Right-handed alpha
Helix 88	88	C	596	603	Right-handed alpha
Helix 89	89	C	604	609	Right-handed alpha
Helix 90	90	C	627	637	Right-handed alpha
Helix 91	91	C	644	646	Right-handed 310
Helix 92	92	C	648	660	Right-handed alpha
Helix 93	93	C	676	681	Right-handed alpha
Helix 94	94	C	713	720	Right-handed 310
Helix 95	95	C	735	740	Right-handed alpha
Helix 96	96	C	741	744	Right-handed 310
Helix 97	97	C	769	776	Right-handed alpha
Helix 98	98	C	803	813	Right-handed alpha
Helix 99	99	C	853	856	Right-handed 310
Helix 100	100	C	869	873	Right-handed 310
Helix 101	101	C	874	887	Right-handed alpha
Helix 102	102	C	901	913	Right-handed alpha
Helix 103	103	C	916	918	Right-handed 310
Helix 104	104	C	927	935	Right-handed alpha
Helix 105	105	C	936	938	Right-handed 310
Helix 106	106	C	949	959	Right-handed alpha
Helix 107	107	C	970	973	Right-handed 310
Helix 108	108	C	974	984	Right-handed alpha
Helix 109	109	C	985	988	Right-handed 310
Helix 110	110	C	992	1006	Right-handed alpha
Helix 111	111	C	1006	1024	Right-handed alpha
Helix 112	112	C	1025	1027	Right-handed 310
Helix 113	113	C	1028	1049	Right-handed alpha

There are 11 sheets in PDB entry 5A01. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	639	642	first strand
Strand 2	A	614	620	parallel
Strand 3	A	584	590	parallel
Strand 4	A	663	666	parallel
Strand 5	A	686	689	parallel
Strand 6	A	704	707	parallel
Strand 7	A	723	726	parallel
Strand 8	A	1056	1057	parallel

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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	777	779	first strand
Strand 2	A	797	799	anti-parallel
Strand 3	A	747	750	parallel
Strand 4	A	762	765	anti-parallel
Strand 5	A	848	851	anti-parallel
Strand 6	A	822	826	parallel
Strand 7	A	816	819	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	782	785	first strand
Strand 2	A	791	794	anti-parallel

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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	920	924	first strand
Strand 2	A	891	897	parallel
Strand 3	A	862	865	parallel
Strand 4	A	940	942	parallel
Strand 5	A	963	964	parallel

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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	639	642	first strand
Strand 2	B	614	620	parallel
Strand 3	B	584	590	parallel
Strand 4	B	663	666	parallel
Strand 5	B	686	689	parallel
Strand 6	B	704	707	parallel
Strand 7	B	723	726	parallel
Strand 8	B	1056	1057	parallel

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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	777	779	first strand
Strand 2	B	797	799	anti-parallel
Strand 3	B	747	750	parallel
Strand 4	B	762	765	anti-parallel
Strand 5	B	848	851	anti-parallel
Strand 6	B	822	826	parallel
Strand 7	B	816	819	anti-parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	782	785	first strand
Strand 2	B	791	794	anti-parallel

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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	920	924	first strand
Strand 2	B	891	897	parallel
Strand 3	B	862	865	parallel
Strand 4	B	940	942	parallel
Strand 5	B	963	964	parallel

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There are 8 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	639	642	first strand
Strand 2	C	614	620	parallel
Strand 3	C	584	590	parallel
Strand 4	C	663	666	parallel
Strand 5	C	686	689	parallel
Strand 6	C	704	707	parallel
Strand 7	C	723	726	parallel
Strand 8	C	1056	1057	parallel

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There are 7 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	777	785	first strand
Strand 2	C	791	799	anti-parallel
Strand 3	C	747	750	parallel
Strand 4	C	762	765	anti-parallel
Strand 5	C	848	851	anti-parallel
Strand 6	C	822	826	parallel
Strand 7	C	816	819	anti-parallel

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There are 5 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	920	924	first strand
Strand 2	C	891	897	parallel
Strand 3	C	862	865	parallel
Strand 4	C	940	942	parallel
Strand 5	C	963	964	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5A01

Analysis of interatomic Contacts of Structural Units in PDB entry:
5A01