Analysis of interatomic Contacts of Structural Units in PDB entry:
5A04

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5A04 entry

There are 6 chains in PDB entry 5A04 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 5	LEU 339
B	ARG 5	LEU 339
C	ARG 5	LEU 339
D	ARG 5	LEU 339
E	ARG 5	LEU 339
F	ARG 5	LEU 339

There are 97 helices in PDB entry 5A04. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	15	21	Right-handed alpha
Helix 2	2	A	22	29	Right-handed 310
Helix 3	3	A	41	53	Right-handed alpha
Helix 4	4	A	55	57	Right-handed 310
Helix 5	5	A	64	71	Right-handed 310
Helix 6	6	A	82	84	Right-handed 310
Helix 7	7	A	85	96	Right-handed alpha
Helix 8	8	A	109	124	Right-handed alpha
Helix 9	9	A	131	135	Right-handed 310
Helix 10	10	A	136	148	Right-handed alpha
Helix 11	11	A	170	173	Right-handed 310
Helix 12	12	A	174	179	Right-handed alpha
Helix 13	13	A	181	186	Right-handed alpha
Helix 14	14	A	186	199	Right-handed alpha
Helix 15	15	A	291	307	Right-handed alpha
Helix 16	16	A	313	334	Right-handed alpha
Helix 17	17	B	15	21	Right-handed alpha
Helix 18	18	B	22	29	Right-handed 310
Helix 19	19	B	41	53	Right-handed alpha
Helix 20	20	B	55	57	Right-handed 310
Helix 21	21	B	64	71	Right-handed 310
Helix 22	22	B	82	84	Right-handed 310
Helix 23	23	B	85	96	Right-handed alpha
Helix 24	24	B	109	124	Right-handed alpha
Helix 25	25	B	131	135	Right-handed 310
Helix 26	26	B	136	148	Right-handed alpha
Helix 27	27	B	170	173	Right-handed 310
Helix 28	28	B	174	179	Right-handed alpha
Helix 29	29	B	181	186	Right-handed alpha
Helix 30	30	B	186	199	Right-handed alpha
Helix 31	31	B	291	307	Right-handed alpha
Helix 32	32	B	313	334	Right-handed alpha
Helix 33	33	C	15	21	Right-handed alpha
Helix 34	34	C	22	29	Right-handed 310
Helix 35	35	C	41	53	Right-handed alpha
Helix 36	36	C	55	57	Right-handed 310
Helix 37	37	C	64	71	Right-handed 310
Helix 38	38	C	82	84	Right-handed 310
Helix 39	39	C	85	96	Right-handed alpha
Helix 40	40	C	109	124	Right-handed alpha
Helix 41	41	C	131	135	Right-handed 310
Helix 42	42	C	136	148	Right-handed alpha
Helix 43	43	C	170	173	Right-handed 310
Helix 44	44	C	174	179	Right-handed alpha
Helix 45	45	C	181	186	Right-handed alpha
Helix 46	46	C	186	199	Right-handed alpha
Helix 47	47	C	291	307	Right-handed alpha
Helix 48	48	C	313	334	Right-handed alpha
Helix 49	49	D	15	21	Right-handed alpha
Helix 50	50	D	22	29	Right-handed 310
Helix 51	51	D	41	52	Right-handed alpha
Helix 52	52	D	55	57	Right-handed 310
Helix 53	53	D	64	71	Right-handed 310
Helix 54	54	D	82	84	Right-handed 310
Helix 55	55	D	85	96	Right-handed alpha
Helix 56	56	D	109	124	Right-handed alpha
Helix 57	57	D	131	135	Right-handed 310
Helix 58	58	D	136	148	Right-handed alpha
Helix 59	59	D	170	173	Right-handed 310
Helix 60	60	D	174	179	Right-handed alpha
Helix 61	61	D	181	186	Right-handed alpha
Helix 62	62	D	186	199	Right-handed alpha
Helix 63	63	D	291	307	Right-handed alpha
Helix 64	64	D	313	334	Right-handed alpha
Helix 65	65	E	15	21	Right-handed alpha
Helix 66	66	E	22	29	Right-handed 310
Helix 67	67	E	41	53	Right-handed alpha
Helix 68	68	E	55	57	Right-handed 310
Helix 69	69	E	64	71	Right-handed 310
Helix 70	70	E	82	84	Right-handed 310
Helix 71	71	E	85	96	Right-handed alpha
Helix 72	72	E	109	124	Right-handed alpha
Helix 73	73	E	131	135	Right-handed 310
Helix 74	74	E	136	148	Right-handed alpha
Helix 75	75	E	170	173	Right-handed 310
Helix 76	76	E	174	179	Right-handed alpha
Helix 77	77	E	181	186	Right-handed alpha
Helix 78	78	E	186	199	Right-handed alpha
Helix 79	79	E	215	219	Right-handed 310
Helix 80	80	E	291	307	Right-handed alpha
Helix 81	81	E	313	334	Right-handed alpha
Helix 82	82	F	15	21	Right-handed alpha
Helix 83	83	F	22	29	Right-handed 310
Helix 84	84	F	41	53	Right-handed alpha
Helix 85	85	F	55	57	Right-handed 310
Helix 86	86	F	64	71	Right-handed 310
Helix 87	87	F	82	84	Right-handed 310
Helix 88	88	F	85	96	Right-handed alpha
Helix 89	89	F	109	124	Right-handed alpha
Helix 90	90	F	131	135	Right-handed 310
Helix 91	91	F	136	148	Right-handed alpha
Helix 92	92	F	170	173	Right-handed 310
Helix 93	93	F	174	179	Right-handed alpha
Helix 94	94	F	181	186	Right-handed alpha
Helix 95	95	F	186	199	Right-handed alpha
Helix 96	96	F	291	307	Right-handed alpha
Helix 97	97	F	313	334	Right-handed alpha

There are 12 sheets in PDB entry 5A04. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB, EA, EB, FA, FB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	60	first strand
Strand 2	A	32	38	parallel
Strand 3	A	7	12	parallel
Strand 4	A	76	79	parallel
Strand 5	A	99	102	parallel
Strand 6	A	127	129	parallel

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There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	282	first strand
Strand 2	A	272	275	anti-parallel
Strand 3	A	257	261	anti-parallel
Strand 4	A	247	254	anti-parallel
Strand 5	A	156	162	anti-parallel
Strand 6	A	236	242	parallel
Strand 7	A	224	230	anti-parallel
Strand 8	A	204	210	anti-parallel
Strand 9	A	337	338	anti-parallel

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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	60	first strand
Strand 2	B	32	38	parallel
Strand 3	B	7	12	parallel
Strand 4	B	76	79	parallel
Strand 5	B	99	102	parallel
Strand 6	B	127	129	parallel

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There are 9 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	282	first strand
Strand 2	B	272	276	anti-parallel
Strand 3	B	257	261	anti-parallel
Strand 4	B	247	254	anti-parallel
Strand 5	B	156	162	anti-parallel
Strand 6	B	236	242	parallel
Strand 7	B	224	230	anti-parallel
Strand 8	B	204	210	anti-parallel
Strand 9	B	337	338	anti-parallel

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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	32	38	parallel
Strand 3	C	7	12	parallel
Strand 4	C	76	79	parallel
Strand 5	C	99	102	parallel
Strand 6	C	127	129	parallel

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There are 9 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	281	283	first strand
Strand 2	C	272	275	anti-parallel
Strand 3	C	257	261	anti-parallel
Strand 4	C	247	254	anti-parallel
Strand 5	C	156	162	anti-parallel
Strand 6	C	236	242	parallel
Strand 7	C	224	230	anti-parallel
Strand 8	C	204	210	anti-parallel
Strand 9	C	337	338	anti-parallel

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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	60	first strand
Strand 2	D	32	38	parallel
Strand 3	D	7	12	parallel
Strand 4	D	76	79	parallel
Strand 5	D	99	102	parallel
Strand 6	D	127	129	parallel

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There are 9 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	281	283	first strand
Strand 2	D	272	275	anti-parallel
Strand 3	D	257	261	anti-parallel
Strand 4	D	247	254	anti-parallel
Strand 5	D	156	162	anti-parallel
Strand 6	D	236	242	parallel
Strand 7	D	224	230	anti-parallel
Strand 8	D	204	210	anti-parallel
Strand 9	D	337	338	anti-parallel

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There are 6 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	60	first strand
Strand 2	E	32	38	parallel
Strand 3	E	7	12	parallel
Strand 4	E	76	79	parallel
Strand 5	E	99	102	parallel
Strand 6	E	127	129	parallel

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There are 9 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	281	283	first strand
Strand 2	E	272	276	anti-parallel
Strand 3	E	257	261	anti-parallel
Strand 4	E	247	254	anti-parallel
Strand 5	E	156	162	anti-parallel
Strand 6	E	236	242	parallel
Strand 7	E	224	230	anti-parallel
Strand 8	E	204	210	anti-parallel
Strand 9	E	337	338	anti-parallel

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There are 6 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	60	first strand
Strand 2	F	32	38	parallel
Strand 3	F	7	12	parallel
Strand 4	F	76	79	parallel
Strand 5	F	99	102	parallel
Strand 6	F	127	129	parallel

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There are 9 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	281	282	first strand
Strand 2	F	272	276	anti-parallel
Strand 3	F	257	261	anti-parallel
Strand 4	F	247	254	anti-parallel
Strand 5	F	156	162	anti-parallel
Strand 6	F	236	242	parallel
Strand 7	F	224	230	anti-parallel
Strand 8	F	204	210	anti-parallel
Strand 9	F	337	338	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5A04

Analysis of interatomic Contacts of Structural Units in PDB entry:
5A04