Analysis of interatomic Contacts of Structural Units in PDB entry:
5A08


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A08 entry

There are 2 chains in PDB entry 5A08 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 71TYR 464
B
 HIS 71TYR 464
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 5A08. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
72 84Right-handed alpha
Helix 2
2
A
94 111Right-handed alpha
Helix 3
3
A
142 144Right-handed 310
Helix 4
4
A
145 160Right-handed alpha
Helix 5
5
A
161 164Right-handed 310
Helix 6
6
A
177 187Right-handed alpha
Helix 7
7
A
200 204Right-handed 310
Helix 8
8
A
211 225Right-handed alpha
Helix 9
9
A
232 245Right-handed alpha
Helix 10
10
A
246 253Right-handed 310
Helix 11
11
A
274 282Right-handed alpha
Helix 12
12
A
295 300Right-handed 310
Helix 13
13
A
301 313Right-handed alpha
Helix 14
14
A
314 317Right-handed 310
Helix 15
15
A
322 328Right-handed alpha
Helix 16
16
A
332 340Right-handed alpha
Helix 17
17
A
356 361Right-handed alpha
Helix 18
18
A
361 375Right-handed alpha
Helix 19
19
A
375 380Right-handed alpha
Helix 20
20
A
383 396Right-handed alpha
Helix 21
21
A
397 399Right-handed 310
Helix 22
22
A
439 445Right-handed 310
Helix 23
23
A
447 456Right-handed alpha
Helix 24
24
A
457 462Right-handed alpha
Helix 25
25
B
72 84Right-handed alpha
Helix 26
26
B
94 112Right-handed alpha
Helix 27
27
B
142 144Right-handed 310
Helix 28
28
B
145 160Right-handed alpha
Helix 29
29
B
161 164Right-handed 310
Helix 30
30
B
177 187Right-handed alpha
Helix 31
31
B
200 204Right-handed 310
Helix 32
32
B
211 223Right-handed alpha
Helix 33
33
B
232 245Right-handed alpha
Helix 34
34
B
246 253Right-handed 310
Helix 35
35
B
274 282Right-handed alpha
Helix 36
36
B
295 299Right-handed 310
Helix 37
37
B
301 313Right-handed alpha
Helix 38
38
B
314 317Right-handed 310
Helix 39
39
B
322 328Right-handed alpha
Helix 40
40
B
332 340Right-handed alpha
Helix 41
41
B
356 360Right-handed alpha
Helix 42
42
B
361 375Right-handed alpha
Helix 43
43
B
375 380Right-handed alpha
Helix 44
44
B
383 396Right-handed alpha
Helix 45
45
B
397 399Right-handed 310
Helix 46
46
B
439 445Right-handed 310
Helix 47
47
B
447 455Right-handed alpha
Helix 48
48
B
457 462Right-handed alpha
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There are 6 sheets in PDB entry 5A08. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 198first strand
Strand 2
A
168 172parallel
Strand 3
A
135 140parallel
Strand 4
A
257 260parallel
Strand 5
A
352 355anti-parallel
Strand 6
A
286 288anti-parallel
Strand 7
A
401 403parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 267first strand
Strand 2
A
409 411anti-parallel
Strand 3
A
414 416anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 292first strand
Strand 2
A
346 347anti-parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 198first strand
Strand 2
B
168 172parallel
Strand 3
B
135 140parallel
Strand 4
B
257 260parallel
Strand 5
B
352 355anti-parallel
Strand 6
B
286 288anti-parallel
Strand 7
B
401 403parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
266 267first strand
Strand 2
B
409 411anti-parallel
Strand 3
B
414 416anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
291 292first strand
Strand 2
B
346 347anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il