Analysis of interatomic Contacts of Structural Units in PDB entry:
5A0C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A0C entry

There are 2 chains in PDB entry 5A0C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 16GLN 252
B
 ILE 16GLN 252
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5A0C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
55 60Right-handed alpha
Helix 2
2
A
63 66Right-handed 310
Helix 3
3
A
243 252Right-handed alpha
Helix 4
4
B
55 60Right-handed alpha
Helix 5
5
B
63 66Right-handed 310
Helix 6
6
B
243 252Right-handed alpha
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There are 4 sheets in PDB entry 5A0C. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
160 167anti-parallel
Strand 3
A
185 188anti-parallel
Strand 4
A
235 239anti-parallel
Strand 5
A
215 222anti-parallel
Strand 6
A
205 208anti-parallel
Strand 7
A
139 144anti-parallel
Strand 8
A
20 21first strand
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 35first strand
Strand 2
A
39 48anti-parallel
Strand 3
A
51 54anti-parallel
Strand 4
A
108 112anti-parallel
Strand 5
A
85 94anti-parallel
Strand 6
A
69 72anti-parallel
Strand 7
A
30 35anti-parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 21first strand
Strand 2
B
160 167anti-parallel
Strand 3
B
185 188anti-parallel
Strand 4
B
235 239anti-parallel
Strand 5
B
215 222anti-parallel
Strand 6
B
205 208anti-parallel
Strand 7
B
139 144anti-parallel
Strand 8
B
20 21first strand
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 35first strand
Strand 2
B
39 48anti-parallel
Strand 3
B
51 54anti-parallel
Strand 4
B
108 112anti-parallel
Strand 5
B
85 94anti-parallel
Strand 6
B
69 72anti-parallel
Strand 7
B
30 35anti-parallel
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