Analysis of interatomic Contacts of Structural Units in PDB entry:
5A0D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A0D entry

There are 4 chains in PDB entry 5A0D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 102THR 276
B
 THR 101THR 276
C
 LYS 102VAL 275
D
 LYS 102VAL 275
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5A0D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
113 117Right-handed 310
Helix 2
2
A
163 171Right-handed alpha
Helix 3
3
A
177 192Right-handed alpha
Helix 4
4
A
199 204Right-handed alpha
Helix 5
5
A
207 224Right-handed alpha
Helix 6
6
A
233 246Right-handed alpha
Helix 7
7
B
113 117Right-handed 310
Helix 8
8
B
163 171Right-handed alpha
Helix 9
9
B
177 192Right-handed alpha
Helix 10
10
B
199 204Right-handed alpha
Helix 11
11
B
207 224Right-handed alpha
Helix 12
12
B
233 246Right-handed alpha
Helix 13
13
C
113 117Right-handed 310
Helix 14
14
C
163 171Right-handed alpha
Helix 15
15
C
178 192Right-handed alpha
Helix 16
16
C
199 204Right-handed alpha
Helix 17
17
C
207 224Right-handed alpha
Helix 18
18
C
233 246Right-handed alpha
Helix 19
19
D
113 117Right-handed 310
Helix 20
20
D
163 171Right-handed alpha
Helix 21
21
D
177 192Right-handed alpha
Helix 22
22
D
199 204Right-handed alpha
Helix 23
23
D
207 224Right-handed alpha
Helix 24
24
D
233 246Right-handed alpha
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There are 4 sheets in PDB entry 5A0D. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 107first strand
Strand 2
A
155 161anti-parallel
Strand 3
A
254 261anti-parallel
Strand 4
A
268 274anti-parallel
Strand 5
A
129 139anti-parallel
Strand 6
A
122 126anti-parallel
Strand 7
A
103 107anti-parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 135first strand
Strand 2
B
122 126anti-parallel
Strand 3
B
102 107anti-parallel
Strand 4
B
155 161anti-parallel
Strand 5
B
254 261anti-parallel
Strand 6
B
268 274anti-parallel
Strand 7
B
137 139anti-parallel
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There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
134 135first strand
Strand 2
C
122 126anti-parallel
Strand 3
C
103 107anti-parallel
Strand 4
C
155 161anti-parallel
Strand 5
C
254 261anti-parallel
Strand 6
C
268 274anti-parallel
Strand 7
C
137 139anti-parallel
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There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
133 135first strand
Strand 2
D
122 126anti-parallel
Strand 3
D
103 107anti-parallel
Strand 4
D
155 161anti-parallel
Strand 5
D
254 261anti-parallel
Strand 6
D
268 274anti-parallel
Strand 7
D
137 139anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il