Analysis of interatomic Contacts of Structural Units in PDB entry:
5A0M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A0M entry

There are 10 chains in PDB entry 5A0M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 303ASN 526
B
 LYS 302ILE 528
C
 A 2 A 14
D
 G 2 T 16
E
 C 1 A 14
H
 G 2 T 16
I
 C 17 T 25
J
 C 15 C 25
K
 C 15 C 25
L
 C 17 T 25
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5A0M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
305 310Right-handed alpha
Helix 2
2
A
316 324Right-handed alpha
Helix 3
3
A
330 343Right-handed alpha
Helix 4
4
A
364 375Right-handed alpha
Helix 5
5
A
409 417Right-handed alpha
Helix 6
6
A
427 432Right-handed alpha
Helix 7
7
A
434 445Right-handed alpha
Helix 8
8
A
468 484Right-handed alpha
Helix 9
9
A
502 505Right-handed 310
Helix 10
10
A
506 513Right-handed alpha
Helix 11
11
A
517 521Right-handed 310
Helix 12
12
B
305 310Right-handed alpha
Helix 13
13
B
316 323Right-handed alpha
Helix 14
14
B
330 343Right-handed alpha
Helix 15
15
B
364 375Right-handed alpha
Helix 16
16
B
376 379Right-handed 310
Helix 17
17
B
409 417Right-handed alpha
Helix 18
18
B
427 432Right-handed alpha
Helix 19
19
B
434 445Right-handed alpha
Helix 20
20
B
468 482Right-handed alpha
Helix 21
21
B
504 513Right-handed alpha
Helix 22
22
B
514 516Right-handed 310
Helix 23
23
B
517 524Right-handed 310
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There are 4 sheets in PDB entry 5A0M. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 348first strand
Strand 2
A
357 362anti-parallel
Strand 3
A
395 402anti-parallel
Strand 4
A
386 389anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
446 448first strand
Strand 2
A
460 462anti-parallel
Strand 3
A
495 500anti-parallel
Strand 4
A
487 492anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
346 348first strand
Strand 2
B
357 362anti-parallel
Strand 3
B
395 402anti-parallel
Strand 4
B
384 389anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
446 448first strand
Strand 2
B
460 462anti-parallel
Strand 3
B
495 500anti-parallel
Strand 4
B
487 492anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il