Analysis of interatomic Contacts of Structural Units in PDB entry:
5A0S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A0S entry

There are 2 chains in PDB entry 5A0S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 26LYS 220
B
 MET 26LYS 220
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 5A0S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 39Right-handed alpha
Helix 2
2
A
50 62Right-handed alpha
Helix 3
3
A
65 75Right-handed alpha
Helix 4
4
A
85 89Right-handed 310
Helix 5
5
A
89 96Right-handed 310
Helix 6
6
A
109 113Right-handed 310
Helix 7
7
A
138 151Right-handed alpha
Helix 8
8
A
155 158Right-handed 310
Helix 9
9
A
159 170Right-handed alpha
Helix 10
10
A
182 196Right-handed alpha
Helix 11
11
A
197 208Right-handed alpha
Helix 12
12
A
208 219Right-handed alpha
Helix 13
13
B
28 40Right-handed alpha
Helix 14
14
B
50 62Right-handed alpha
Helix 15
15
B
65 75Right-handed alpha
Helix 16
16
B
85 89Right-handed 310
Helix 17
17
B
92 96Right-handed 310
Helix 18
18
B
109 113Right-handed 310
Helix 19
19
B
138 151Right-handed alpha
Helix 20
20
B
155 158Right-handed 310
Helix 21
21
B
159 170Right-handed alpha
Helix 22
22
B
182 196Right-handed alpha
Helix 23
23
B
197 208Right-handed alpha
Helix 24
24
B
208 219Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5A0S. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 43first strand
Strand 2
A
79 82parallel
Strand 3
A
121 124parallel
Strand 4
A
115 116anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 43first strand
Strand 2
B
79 82parallel
Strand 3
B
121 124parallel
Strand 4
B
115 116anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il