Analysis of interatomic Contacts of Structural Units in PDB entry:
5A0V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A0V entry

There are 4 chains in PDB entry 5A0V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2SER 455
B
 SER 2ASP 452
E
 C 0 C 5
F
 C 0 C 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 5A0V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
67 72Right-handed alpha
Helix 2
2
A
73 75Right-handed 310
Helix 3
3
A
86 91Right-handed alpha
Helix 4
4
A
92 98Right-handed alpha
Helix 5
5
A
108 122Right-handed alpha
Helix 6
6
A
187 198Right-handed alpha
Helix 7
7
A
219 231Right-handed alpha
Helix 8
8
A
244 258Right-handed alpha
Helix 9
9
A
266 279Right-handed alpha
Helix 10
10
A
291 298Right-handed 310
Helix 11
11
A
299 301Right-handed 310
Helix 12
12
A
316 323Right-handed alpha
Helix 13
13
A
346 360Right-handed alpha
Helix 14
14
A
379 391Right-handed alpha
Helix 15
15
A
401 415Right-handed alpha
Helix 16
16
A
418 421Right-handed 310
Helix 17
17
B
67 72Right-handed alpha
Helix 18
18
B
73 75Right-handed 310
Helix 19
19
B
86 91Right-handed alpha
Helix 20
20
B
92 100Right-handed alpha
Helix 21
21
B
108 120Right-handed alpha
Helix 22
22
B
121 123Right-handed 310
Helix 23
23
B
187 198Right-handed alpha
Helix 24
24
B
217 231Right-handed alpha
Helix 25
25
B
244 258Right-handed alpha
Helix 26
26
B
266 279Right-handed alpha
Helix 27
27
B
293 298Right-handed alpha
Helix 28
28
B
299 301Right-handed 310
Helix 29
29
B
316 323Right-handed alpha
Helix 30
30
B
346 360Right-handed alpha
Helix 31
31
B
379 391Right-handed alpha
Helix 32
32
B
401 415Right-handed alpha
Helix 33
33
B
418 421Right-handed 310
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There are 8 sheets in PDB entry 5A0V. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 130first strand
Strand 2
A
105 107parallel
Strand 3
A
77 82parallel
Strand 4
A
42 48parallel
Strand 5
A
34 39anti-parallel
Strand 6
A
19 25anti-parallel
Strand 7
A
429 434anti-parallel
Strand 8
A
437 443anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
449 451anti-parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 139first strand
Strand 2
A
142 149anti-parallel
Strand 3
A
156 163anti-parallel
Strand 4
A
166 170anti-parallel
Strand 5
A
201 205parallel
Strand 6
A
395 398parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 264first strand
Strand 2
A
303 307parallel
Strand 3
A
236 239parallel
Strand 4
A
335 338parallel
Strand 5
A
363 366parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 130first strand
Strand 2
B
105 107parallel
Strand 3
B
77 82parallel
Strand 4
B
42 48parallel
Strand 5
B
34 39anti-parallel
Strand 6
B
19 25anti-parallel
Strand 7
B
429 434anti-parallel
Strand 8
B
437 443anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 64first strand
Strand 2
B
449 451anti-parallel
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There are 6 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 139first strand
Strand 2
B
142 148anti-parallel
Strand 3
B
157 163anti-parallel
Strand 4
B
166 170anti-parallel
Strand 5
B
201 205parallel
Strand 6
B
394 398parallel
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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
261 265first strand
Strand 2
B
303 307parallel
Strand 3
B
236 239parallel
Strand 4
B
335 338parallel
Strand 5
B
363 365parallel
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