Analysis of interatomic Contacts of Structural Units in PDB entry:
5A13

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5A13 entry

There are 10 chains in PDB entry 5A13 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 8	MET 249
B	ALA 5	MET 249
C	MET 8	MET 249
D	MET 8	MET 249
E	MET 8	MET 249
F	MET 8	MET 249
G	ALA 5	MET 249
H	MET 8	MET 249
I	MET 8	MET 249
J	MET 8	MET 249

There are120 helices in PDB entry 5A13. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	10	17	Right-handed alpha
Helix 2	2	A	31	36	Right-handed 310
Helix 3	3	A	37	55	Right-handed alpha
Helix 4	4	A	83	97	Right-handed alpha
Helix 5	5	A	97	102	Right-handed alpha
Helix 6	6	A	124	131	Right-handed alpha
Helix 7	7	A	152	158	Right-handed alpha
Helix 8	8	A	159	172	Right-handed alpha
Helix 9	9	A	174	178	Right-handed 310
Helix 10	10	A	204	217	Right-handed alpha
Helix 11	11	A	218	222	Right-handed 310
Helix 12	12	A	238	247	Right-handed alpha
Helix 13	13	B	10	15	Right-handed alpha
Helix 14	14	B	31	36	Right-handed 310
Helix 15	15	B	37	55	Right-handed alpha
Helix 16	16	B	83	97	Right-handed alpha
Helix 17	17	B	97	102	Right-handed alpha
Helix 18	18	B	124	134	Right-handed alpha
Helix 19	19	B	152	157	Right-handed alpha
Helix 20	20	B	159	172	Right-handed alpha
Helix 21	21	B	174	179	Right-handed 310
Helix 22	22	B	204	217	Right-handed alpha
Helix 23	23	B	218	222	Right-handed 310
Helix 24	24	B	238	247	Right-handed alpha
Helix 25	25	C	10	17	Right-handed alpha
Helix 26	26	C	37	43	Right-handed alpha
Helix 27	27	C	43	55	Right-handed alpha
Helix 28	28	C	83	97	Right-handed alpha
Helix 29	29	C	97	102	Right-handed alpha
Helix 30	30	C	124	131	Right-handed alpha
Helix 31	31	C	152	158	Right-handed alpha
Helix 32	32	C	159	175	Right-handed alpha
Helix 33	33	C	176	178	Right-handed 310
Helix 34	34	C	204	217	Right-handed alpha
Helix 35	35	C	218	222	Right-handed 310
Helix 36	36	C	238	247	Right-handed alpha
Helix 37	37	D	10	17	Right-handed alpha
Helix 38	38	D	31	36	Right-handed alpha
Helix 39	39	D	37	55	Right-handed alpha
Helix 40	40	D	83	96	Right-handed alpha
Helix 41	41	D	97	102	Right-handed alpha
Helix 42	42	D	124	134	Right-handed alpha
Helix 43	43	D	152	158	Right-handed alpha
Helix 44	44	D	159	172	Right-handed alpha
Helix 45	45	D	174	179	Right-handed 310
Helix 46	46	D	204	217	Right-handed alpha
Helix 47	47	D	218	222	Right-handed 310
Helix 48	48	D	238	248	Right-handed alpha
Helix 49	49	E	10	17	Right-handed alpha
Helix 50	50	E	37	55	Right-handed alpha
Helix 51	51	E	83	97	Right-handed alpha
Helix 52	52	E	97	102	Right-handed alpha
Helix 53	53	E	124	134	Right-handed alpha
Helix 54	54	E	152	158	Right-handed alpha
Helix 55	55	E	159	172	Right-handed alpha
Helix 56	56	E	174	179	Right-handed 310
Helix 57	57	E	204	217	Right-handed alpha
Helix 58	58	E	218	222	Right-handed 310
Helix 59	59	E	238	247	Right-handed alpha
Helix 60	60	F	10	17	Right-handed alpha
Helix 61	61	F	31	34	Right-handed 310
Helix 62	62	F	37	43	Right-handed alpha
Helix 63	63	F	43	55	Right-handed alpha
Helix 64	64	F	83	97	Right-handed alpha
Helix 65	65	F	97	102	Right-handed alpha
Helix 66	66	F	124	134	Right-handed alpha
Helix 67	67	F	152	158	Right-handed alpha
Helix 68	68	F	159	172	Right-handed alpha
Helix 69	69	F	174	179	Right-handed 310
Helix 70	70	F	204	217	Right-handed alpha
Helix 71	71	F	218	222	Right-handed 310
Helix 72	72	F	238	248	Right-handed alpha
Helix 73	73	G	10	15	Right-handed alpha
Helix 74	74	G	31	34	Right-handed 310
Helix 75	75	G	37	55	Right-handed alpha
Helix 76	76	G	83	97	Right-handed alpha
Helix 77	77	G	97	102	Right-handed alpha
Helix 78	78	G	124	134	Right-handed alpha
Helix 79	79	G	152	158	Right-handed alpha
Helix 80	80	G	159	172	Right-handed alpha
Helix 81	81	G	174	179	Right-handed 310
Helix 82	82	G	204	217	Right-handed alpha
Helix 83	83	G	218	222	Right-handed 310
Helix 84	84	G	238	247	Right-handed alpha
Helix 85	85	H	10	15	Right-handed alpha
Helix 86	86	H	31	36	Right-handed 310
Helix 87	87	H	37	43	Right-handed alpha
Helix 88	88	H	43	55	Right-handed alpha
Helix 89	89	H	83	96	Right-handed alpha
Helix 90	90	H	97	102	Right-handed alpha
Helix 91	91	H	124	131	Right-handed alpha
Helix 92	92	H	152	158	Right-handed alpha
Helix 93	93	H	159	172	Right-handed alpha
Helix 94	94	H	174	178	Right-handed 310
Helix 95	95	H	204	217	Right-handed alpha
Helix 96	96	H	218	222	Right-handed 310
Helix 97	97	H	238	248	Right-handed alpha
Helix 98	98	I	10	17	Right-handed alpha
Helix 99	99	I	31	34	Right-handed 310
Helix 100	100	I	37	55	Right-handed alpha
Helix 101	101	I	83	97	Right-handed alpha
Helix 102	102	I	97	102	Right-handed alpha
Helix 103	103	I	124	134	Right-handed alpha
Helix 104	104	I	152	158	Right-handed alpha
Helix 105	105	I	159	172	Right-handed alpha
Helix 106	106	I	174	179	Right-handed 310
Helix 107	107	I	204	217	Right-handed alpha
Helix 108	108	I	218	222	Right-handed 310
Helix 109	109	I	238	248	Right-handed alpha
Helix 110	110	J	10	17	Right-handed alpha
Helix 111	111	J	37	55	Right-handed alpha
Helix 112	112	J	83	97	Right-handed alpha
Helix 113	113	J	97	102	Right-handed alpha
Helix 114	114	J	124	134	Right-handed alpha
Helix 115	115	J	152	158	Right-handed alpha
Helix 116	116	J	159	172	Right-handed alpha
Helix 117	117	J	174	179	Right-handed 310
Helix 118	118	J	204	217	Right-handed alpha
Helix 119	119	J	218	222	Right-handed 310
Helix 120	120	J	238	247	Right-handed alpha

There are 10 sheets in PDB entry 5A13. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A, EA, FA, GA, HA, IA, JA,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	29	first strand
Strand 2	A	75	81	anti-parallel
Strand 3	A	60	65	anti-parallel
Strand 4	A	232	237	anti-parallel
Strand 5	A	143	151	parallel
Strand 6	A	196	202	anti-parallel
Strand 7	A	181	187	anti-parallel
Strand 8	A	103	112	anti-parallel
Strand 9	A	21	29	first strand

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There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	29	first strand
Strand 2	B	75	81	anti-parallel
Strand 3	B	60	65	anti-parallel
Strand 4	B	232	237	anti-parallel
Strand 5	B	143	151	parallel
Strand 6	B	196	202	anti-parallel
Strand 7	B	181	187	anti-parallel
Strand 8	B	103	112	anti-parallel
Strand 9	B	21	29	first strand

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There are 9 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	29	first strand
Strand 2	C	75	81	anti-parallel
Strand 3	C	60	65	anti-parallel
Strand 4	C	232	237	anti-parallel
Strand 5	C	143	151	parallel
Strand 6	C	196	202	anti-parallel
Strand 7	C	181	187	anti-parallel
Strand 8	C	103	112	anti-parallel
Strand 9	C	21	29	first strand

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There are 9 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	29	first strand
Strand 2	D	75	81	anti-parallel
Strand 3	D	60	65	anti-parallel
Strand 4	D	232	237	anti-parallel
Strand 5	D	143	151	parallel
Strand 6	D	196	202	anti-parallel
Strand 7	D	181	187	anti-parallel
Strand 8	D	103	112	anti-parallel
Strand 9	D	21	29	first strand

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There are 9 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	21	29	first strand
Strand 2	E	75	81	anti-parallel
Strand 3	E	60	65	anti-parallel
Strand 4	E	232	236	anti-parallel
Strand 5	E	143	151	parallel
Strand 6	E	196	202	anti-parallel
Strand 7	E	181	187	anti-parallel
Strand 8	E	103	112	anti-parallel
Strand 9	E	21	29	first strand

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There are 9 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	21	29	first strand
Strand 2	F	75	81	anti-parallel
Strand 3	F	60	65	anti-parallel
Strand 4	F	232	237	anti-parallel
Strand 5	F	143	151	parallel
Strand 6	F	196	202	anti-parallel
Strand 7	F	181	187	anti-parallel
Strand 8	F	103	112	anti-parallel
Strand 9	F	21	29	first strand

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There are 9 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	21	29	first strand
Strand 2	G	75	81	anti-parallel
Strand 3	G	60	65	anti-parallel
Strand 4	G	232	237	anti-parallel
Strand 5	G	143	151	parallel
Strand 6	G	196	202	anti-parallel
Strand 7	G	181	187	anti-parallel
Strand 8	G	103	112	anti-parallel
Strand 9	G	21	29	first strand

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There are 9 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	21	29	first strand
Strand 2	H	75	81	anti-parallel
Strand 3	H	60	65	anti-parallel
Strand 4	H	232	237	anti-parallel
Strand 5	H	143	151	parallel
Strand 6	H	196	202	anti-parallel
Strand 7	H	181	187	anti-parallel
Strand 8	H	103	112	anti-parallel
Strand 9	H	21	29	first strand

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There are 9 strands in IA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	21	29	first strand
Strand 2	I	75	81	anti-parallel
Strand 3	I	60	65	anti-parallel
Strand 4	I	232	237	anti-parallel
Strand 5	I	143	151	parallel
Strand 6	I	196	202	anti-parallel
Strand 7	I	181	187	anti-parallel
Strand 8	I	103	112	anti-parallel
Strand 9	I	21	29	first strand

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There are 9 strands in JA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	21	29	first strand
Strand 2	J	75	81	anti-parallel
Strand 3	J	60	65	anti-parallel
Strand 4	J	232	237	anti-parallel
Strand 5	J	143	151	parallel
Strand 6	J	196	202	anti-parallel
Strand 7	J	181	187	anti-parallel
Strand 8	J	103	112	anti-parallel
Strand 9	J	21	29	first strand

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5A13

Analysis of interatomic Contacts of Structural Units in PDB entry:
5A13