Analysis of interatomic Contacts of Structural Units in PDB entry:
5A20


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A20 entry

There are 8 chains in PDB entry 5A20 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 29ALA 468
B
 PRO 29ALA 468
C
 GLN 4ARG 102
D
 GLN 4ARG 102
E
 MET 1GLY 109
F
 MET 1GLY 109
G
 THR 2ASN 134
H
 GLN 9GLU 169
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 51 helices in PDB entry 5A20. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 41Right-handed alpha
Helix 2
2
A
43 55Right-handed alpha
Helix 3
3
A
57 63Right-handed alpha
Helix 4
4
A
86 102Right-handed alpha
Helix 5
5
A
111 122Right-handed alpha
Helix 6
6
A
124 139Right-handed alpha
Helix 7
7
A
256 284Right-handed alpha
Helix 8
8
A
295 307Right-handed alpha
Helix 9
9
A
324 344Right-handed alpha
Helix 10
10
A
358 366Right-handed alpha
Helix 11
11
A
369 382Right-handed alpha
Helix 12
12
A
384 400Right-handed alpha
Helix 13
13
A
405 411Right-handed alpha
Helix 14
14
A
418 436Right-handed alpha
Helix 15
15
A
440 447Right-handed alpha
Helix 16
16
A
453 466Right-handed alpha
Helix 17
17
B
30 41Right-handed alpha
Helix 18
18
B
43 55Right-handed alpha
Helix 19
19
B
57 63Right-handed alpha
Helix 20
20
B
86 102Right-handed alpha
Helix 21
21
B
111 122Right-handed alpha
Helix 22
22
B
124 139Right-handed alpha
Helix 23
23
B
256 284Right-handed alpha
Helix 24
24
B
295 307Right-handed alpha
Helix 25
25
B
324 344Right-handed alpha
Helix 26
26
B
358 366Right-handed alpha
Helix 27
27
B
369 382Right-handed alpha
Helix 28
28
B
384 400Right-handed alpha
Helix 29
29
B
405 411Right-handed alpha
Helix 30
30
B
418 436Right-handed alpha
Helix 31
31
B
440 447Right-handed alpha
Helix 32
32
B
453 466Right-handed alpha
Helix 33
33
C
5 12Right-handed alpha
Helix 34
34
C
12 17Right-handed alpha
Helix 35
35
C
17 33Right-handed alpha
Helix 36
36
C
50 69Right-handed alpha
Helix 37
37
C
80 86Right-handed alpha
Helix 38
38
C
88 93Right-handed alpha
Helix 39
39
D
5 12Right-handed alpha
Helix 40
40
D
12 17Right-handed alpha
Helix 41
41
D
17 33Right-handed alpha
Helix 42
42
D
50 69Right-handed alpha
Helix 43
43
D
80 86Right-handed alpha
Helix 44
44
D
88 93Right-handed alpha
Helix 45
45
E
64 69Right-handed alpha
Helix 46
46
G
3 21Right-handed alpha
Helix 47
47
G
21 28Right-handed alpha
Helix 48
48
G
76 91Right-handed alpha
Helix 49
49
H
75 86Right-handed alpha
Helix 50
50
H
144 156Right-handed alpha
Helix 51
51
H
160 166Right-handed alpha
Back to top of page

There are 18 sheets in PDB entry 5A20. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, EA, EB, EC, FA, FB, GA, GB, HA, HB, HC,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
73 75anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 149first strand
Strand 2
A
155 156anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 197first strand
Strand 2
A
208 209anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 232first strand
Strand 2
A
235 236anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 67first strand
Strand 2
B
73 75anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 149first strand
Strand 2
B
155 156anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 197first strand
Strand 2
B
208 209anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
231 232first strand
Strand 2
B
235 236anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
15 17first strand
Strand 2
E
25 27anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
61 63first strand
Strand 2
E
96 98anti-parallel
Strand 3
E
88 91anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
74 76first strand
Strand 2
E
79 81anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
13 15first strand
Strand 2
F
27 29anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
74 76first strand
Strand 2
F
79 81anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
44 46first strand
Strand 2
G
64 70anti-parallel
Strand 3
G
124 129anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in GB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
96 97first strand
Strand 2
G
100 101anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
31 32first strand
Strand 2
H
67 68anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in HB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
93 94first strand
Strand 2
H
106 107anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in HC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
119 121first strand
Strand 2
H
126 128anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il