Analysis of interatomic Contacts of Structural Units in PDB entry:
5A3Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A3Q entry

There is 1 chain in PDB entry 5A3Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 994
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 53 helices in PDB entry 5A3Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 7Right-handed 310
Helix 2
2
A
8 16Right-handed alpha
Helix 3
3
A
25 37Right-handed alpha
Helix 4
4
A
48 57Right-handed alpha
Helix 5
5
A
59 78Right-handed alpha
Helix 6
6
A
83 88Right-handed alpha
Helix 7
7
A
88 110Right-handed alpha
Helix 8
8
A
114 120Right-handed alpha
Helix 9
9
A
121 123Right-handed 310
Helix 10
10
A
143 145Right-handed 310
Helix 11
11
A
177 182Right-handed alpha
Helix 12
12
A
200 204Right-handed 310
Helix 13
13
A
226 229Right-handed 310
Helix 14
14
A
230 242Right-handed alpha
Helix 15
15
A
247 269Right-handed alpha
Helix 16
16
A
270 280Right-handed 310
Helix 17
17
A
292 307Right-handed alpha
Helix 18
18
A
310 329Right-handed alpha
Helix 19
19
A
337 342Right-handed alpha
Helix 20
20
A
343 345Right-handed 310
Helix 21
21
A
403 406Right-handed 310
Helix 22
22
A
407 420Right-handed alpha
Helix 23
23
A
439 453Right-handed alpha
Helix 24
24
A
469 479Right-handed alpha
Helix 25
25
A
517 524Right-handed alpha
Helix 26
26
A
538 554Right-handed alpha
Helix 27
27
A
555 558Right-handed 310
Helix 28
28
A
572 576Right-handed 310
Helix 29
29
A
580 582Right-handed 310
Helix 30
30
A
583 588Right-handed alpha
Helix 31
31
A
606 617Right-handed alpha
Helix 32
32
A
628 640Right-handed alpha
Helix 33
33
A
648 650Right-handed 310
Helix 34
34
A
655 661Right-handed alpha
Helix 35
35
A
662 673Right-handed alpha
Helix 36
36
A
680 693Right-handed alpha
Helix 37
37
A
704 706Right-handed 310
Helix 38
38
A
707 714Right-handed alpha
Helix 39
39
A
724 730Right-handed alpha
Helix 40
40
A
740 782Right-handed alpha
Helix 41
41
A
788 798Right-handed alpha
Helix 42
42
A
800 807Right-handed alpha
Helix 43
43
A
808 810Right-handed 310
Helix 44
44
A
831 858Right-handed alpha
Helix 45
45
A
867 871Right-handed 310
Helix 46
46
A
872 876Right-handed 310
Helix 47
47
A
887 892Right-handed 310
Helix 48
48
A
893 915Right-handed alpha
Helix 49
49
A
926 929Right-handed 310
Helix 50
50
A
930 946Right-handed alpha
Helix 51
51
A
951 958Right-handed alpha
Helix 52
52
A
962 971Right-handed alpha
Helix 53
53
A
975 991Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5A3Q. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 141first strand
Strand 2
A
126 130anti-parallel
Strand 3
A
150 154anti-parallel
Strand 4
A
218 225anti-parallel
Strand 5
A
162 168anti-parallel
Strand 6
A
207 208anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
174 176anti-parallel
Strand 3
A
213 216anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 333first strand
Strand 2
A
733 735anti-parallel
Strand 3
A
716 720parallel
Strand 4
A
698 702parallel
Strand 5
A
347 350parallel
Strand 6
A
620 624parallel
Strand 7
A
675 677parallel
Strand 8
A
652 654parallel
Back to list of sheets
Back to top of page

There are 9 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 401first strand
Strand 2
A
395 397anti-parallel
Strand 3
A
376 384anti-parallel
Strand 4
A
362 373anti-parallel
Strand 5
A
591 600anti-parallel
Strand 6
A
560 567anti-parallel
Strand 7
A
511 516anti-parallel
Strand 8
A
493 499anti-parallel
Strand 9
A
480 485anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 401first strand
Strand 2
A
395 397anti-parallel
Strand 3
A
376 384anti-parallel
Strand 4
A
362 373anti-parallel
Strand 5
A
591 600anti-parallel
Strand 6
A
525 530parallel
Strand 7
A
533 536anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 428first strand
Strand 2
A
433 437anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il